Pyrgilauda ruficollis (rufous-necked snowfinch): 121364526
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Entry
121364526 CDS
T07608
Symbol
DDX3X
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121364526 (DDX3X)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121364526 (DDX3X)
03041 Spliceosome [BR:
pruf03041
]
121364526 (DDX3X)
03036 Chromosome and associated proteins [BR:
pruf03036
]
121364526 (DDX3X)
Enzymes [BR:
pruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121364526 (DDX3X)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121364526 (DDX3X)
mRNA cycle factors
Common to processing body (P body) and stress granule
121364526 (DDX3X)
Spliceosome [BR:
pruf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121364526 (DDX3X)
Chromosome and associated proteins [BR:
pruf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121364526 (DDX3X)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121364526
NCBI-ProteinID:
XP_041343817
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MSHVAVENALSLDQQFSGLDLNSSDSQSEGSSTSKGRYIPPHLRNREASKQGFDSGGWSS
RRDKDAYSSFGARSDRDAKSSFFDRGTGSRGGRYEERGRGGDYDRSGFGRFDRGGGNSRW
CDKSDEDDWSKPLPPSERLEQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFSDVDM
GEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGP
GDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIG
QQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ
DTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEPDK
RSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQF
RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE
RNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKSSRFSGGFGARDYRTSS
GFGSSSSSSSRSTSSRSGGSGSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggtggaaaatgccctcagtctagaccagcagttttctggtctagac
ttgaattcctcagactctcagagtgaaggaagctctacaagcaaaggccgatacattcct
cctcacttgcggaacagggaagcttcaaaacagggtttcgatagcggcggctggagctcc
agacgagacaaggatgcctacagcagcttcggtgcgcgctccgaccgcgacgccaaatcc
agcttcttcgaccgtgggaccggatcccgaggagggagatacgaggagcgtggcagaggc
ggggactatgaccgaagtggcttcggcagatttgaccgtggtggcgggaacagccgctgg
tgtgacaaatcagatgaggatgactggtccaagcctctccccccaagtgaacgcctagaa
caggaactcttttcaggaagcaatactggcattaactttgagaaatacgatgatattcct
gttgaagcaacaggcagcaactgtcctccacatattgaaagtttcagtgatgttgacatg
ggagaaattatcatgggaaacattgaactcacacgctacacccgtcctactccagtccag
aaacatgcaatacctattattaaagaaaagagagacttaatggcctgtgctcagacaggg
tctgggaaaacagctgcatttcttctaccaatactgagccagatatatgcagatggccct
ggtgatgccttgagagcaatgaaggagaatgggaggtacgggcgccgtaagcaatatcca
atctcactggtcttggctcctactagagaattggctgtgcagatctatgaggaagccaga
aagtttgcataccgctccagagttcgcccctgtgttgtatatggtggtgcagacattggc
cagcagatccgtgacttggaacgtggatgtcacttgcttgtagcaactccaggacgactg
gttgatatgatggagagaggaaagattggactggatttctgcaagtatctagtccttgat
gaagctgacagaatgcttgatatggggtttgaacctcaaattcgtcgaattgttgaacaa
gatactatgccaccaaagggggttcgtcacaccatgatgttcagtgctactttccccaag
gaaatccagatgcttgctcgtgacttccttgatgaatacatctttctggccgttggcaga
gtaggttctacatctgagaacatcacacagaaagtagtatgggtggaagagccagacaaa
cgatcgttcctgcttgacctgctaaatgccacaggtaaagattcgttgactctggtgttc
gtggaaactaaaaagggggcggatgctctagaggacttcctgtaccatgaaggctatgcc
tgtacaagtatccacggagatcgctcccagagggacagagaggaagcactgcaccagttc
cgctctggcaagagccccattcttgttgccacagcagtagcagcaagaggactggatatc
tcaaatgtaaagcatgtcataaacttcgacttgccaagtgacattgaggagtacgtacat
cgtattggccgtacaggccgtgtaggaaaccttggtcttgccacttcattcttcaatgag
aggaacataaacattacaaaggacttgcttgatctccttgtggaggctaagcaagaagta
ccatcttggctggagaacatggcctatgagcagcatcacaaaggaggaggcagccgtggg
cgatctaagagcagtcggttcagcggaggcttcggagccagggactaccggacgagcagc
ggcttcggcagcagcagctccagcagcagccggtcaaccagcagccgcagcggcgggagc
ggcagcagaggcttcggaggtggtggttatggaggcttctacaacagtgatggatatgga
ggaaactataactcccagggggtggactggtggggcaactga
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