Pyrgilauda ruficollis (rufous-necked snowfinch): 121364880
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Entry
121364880 CDS
T07608
Symbol
POLE
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03030
DNA replication
pruf03410
Base excision repair
pruf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121364880 (POLE)
03410 Base excision repair
121364880 (POLE)
03420 Nucleotide excision repair
121364880 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pruf03032
]
121364880 (POLE)
03400 DNA repair and recombination proteins [BR:
pruf03400
]
121364880 (POLE)
Enzymes [BR:
pruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121364880 (POLE)
DNA replication proteins [BR:
pruf03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
121364880 (POLE)
DNA repair and recombination proteins [BR:
pruf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
121364880 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Motif
Other DBs
NCBI-GeneID:
121364880
NCBI-ProteinID:
XP_041344516
LinkDB
All DBs
Position
Unknown
AA seq
2295 aa
AA seq
DB search
MGQRDGAEPEPARRGRRPGGPREPADGAGSGRDDVPALSALKRLERAQRTDRLDALFGFE
RPAEPGERTGWLINMHPTEVLDEDRQSVSAVDYYFIQEDGSRFKVALPYKPYFYIATQKG
CEREVSSFLSKKFQGKIAKLETVPKEDLDLPNHLVGLKRNYIKLSFNTVEDLLKVRKEIS
PAVRKNREQDQASDVYTTMLSSALSGASLSTDEEGVSKKIANQMDNIVDMREYDVPYHVR
LSIDLKIHVAHWYNVRYRGNTYPPEITRRDDLVERPDPVVLAFDIETTKLPLKFPDADTD
QIMMISYMIDGQGYLITNREIVSENIEDFEFTPKPEYEGPFCVFNEPDEAHLIRRWFEHV
QETKPTIIVTYNGDFFDWPFVEARAAAHGINMYQEIGFQKDSQGEYKASQCIHMDCLRWV
KRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYMYM
KYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAYHANIIFPNKQEQEFNKLTEDG
HVLDSETYVGGHVEALESGVFRSDIPCRFKMNPAAFDFLVQNVEKTLQHAIEEEEGLPLD
QVTNFQEVCDEIKAKLNSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATC
AACDFNKPGANCQRRMTWQWRGEFMPASRSEYHRIQQQLESEKFPPLFPDGPPRAFHELS
QEEQAKYEKKRLADYCRKAYKKIHVTKVEERVTTICQRENSFYVDTVRAFRDRRYEFKGL
HKVWKKKLSAAVETGDASEVKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEM
AGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSTNIKKPKVTIS
YPGAMLNILVKEGFTNDQYQELQDPASLTYVTRSENSIFFEVDGPYLAMILPASKEEGKK
LKKRYAVFNEDGSLAELKGFEVKRRGELQLVKIFQSSVFEAFLKGSTLEEVYASVAKVAD
YWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKD
AGLSCRFIISKKPEGSPVTERAIPLAIFQAEPSVRKHYLRKWLKSPSLQDFNIRAILDWD
YYIERLGSTIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDVYKQKKINELFVSEG
KKQILANPPVEGTPSSQVRDIEDFGAVKIPLPLVPIANKRKRIPAAEESQELSQDLELSQ
SWREILGPPPSLGTTKEERLVWLRFHQKKWELQARQRQERRKRRRLEDGGVVAGGGVVRD
ALSKGLSSYLRRTARSILDLPWQVVQIAETSQPGLFRLWAVIGSDLHCIKLSIPRVFYVN
QRVPKPEEGTAYRKVNRILPRSNLVYNLYEYSVPEDMYQEHINEINADLSAPDIEGVYET
QVPLLFRALIHLGCVCMVSRQLVRHLAGREAETFNIEHLEMRSLAQFTYLEPGSIRHIYL
YHSSQGSKAVLGLFIPSQRKAAVFVLDKVRSNQMPNLTTLFSVERTALLEKVGKELLPPD
KHTFEVRAETDPKAIYRGVQRLLLGYKDERRGPTLVAVQSNWGLKQLASGIPIIEEFPLV
PIRLVDDISYSVLDWQRHAARRMIRHYLNLDTCLSQAFEMSRYYHIPIGNLPDDISTFGS
DLFFSRHLHRHNHLLWLSPTARPDLGGKEADDNRLVMEFDERASVEINNPGCYSTVCLEL
DIQSLAVNTVLQSHHVNDMEGGSSMSISFDVIQQASLEDMVTGNQAANIPASYDETALCS
NTFRILKSMVVSWVKEITQYHNVYADNQVIHFYRWLRSPSSLLYDPALHRMLHNMMKKLF
LQLVAEFKRLGSSVVYANFNRIILCTKKRYIEDAISYMEYIINSIHSKEIFHSLTISFSR
CWEFLLWMDPANYGGIKGKVDSRIHYGEKDTSKTLEEESEEEEEEEEVVREEEEEKGEPD
VEELLENNWNIAQFLPQAGSCQSYFLMIISAYIVAVYHSMKEELRRNTPGSTPIKRRSTS
QVSQEALGELRAMPGMITFSQDYVANELTQSFFTITQKIQKKMAGSQNATEPSDMFPVLP
GSYLPLNNPALEFIKYVCKVLSLDANITNQVNKLRRDLLRLIEVGEFSEAAQFRDPCRSY
VLPEVICRNCNFCRDLDLCKDTALSQDRLVLPGWLCPSCHVQYDTDAIEMALVEALQKKL
MAFVLQDLVCKKCHGVKETHMPVYCSCAGDFTLTISSQVFMDHVRVFQNIARHYGMAYLL
ETIEWLLHTNLQLQQ
NT seq
6888 nt
NT seq
+upstream
nt +downstream
nt
atggggcagcgggacggcgccgagcccgagccagcgcggcgggggcggcggccgggcggg
ccccgggagccggcggacggcgccgggtccgggcgtgacgatgtccccgcgctgtctgca
ctcaagcgcctggagcgggcacagcgcacggaccggttggacgcgctgttcggcttcgag
cgacccgcagagcccggtgagcggacgggctggctcatcaacatgcacccgacggaggtg
ctggatgaggaccggcagtcagtgagcgcagtggactactacttcatccaggaggatggg
agccgcttcaaggtggccctaccctacaagccctacttctacattgccacccagaagggc
tgtgagcgggaagtgtcctccttcctctccaagaagttccaagggaagattgcaaagctg
gaaactgtccccaaagaggacttggacctgccaaaccacttggtaggcctgaagaggaac
tacatcaagctgtccttcaacacggtggaggacttgttgaaggtgcggaaggagatctct
cctgctgtgaggaaaaacagggagcaagaccaggcgagtgatgtctacacaaccatgctg
tcgagtgctctgagtggggccagtctaagcacagatgaggaaggagtgtcaaaaaaaatt
gccaaccagatggacaacattgtggatatgcgggagtatgatgtgccttaccatgttcgc
ctttccatcgacctgaagattcatgtggctcactggtacaacgtgcgataccggggcaac
acctacccacctgaaatcacccgtcgagatgaccttgtggagaggccggatcctgttgtt
cttgcctttgatattgaaacaaccaaactccctttgaagtttcctgatgcagacacagac
cagatcatgatgatctcctacatgattgatgggcagggctacctgatcacaaacagagag
attgtctcagagaacattgaagactttgagtttactcccaagccggagtatgagggtcca
ttttgtgtctttaacgaaccggatgaggctcatttaatccggagatggtttgaacatgtc
caggagaccaaacccaccatcattgtcacatacaacggagacttctttgactggcccttt
gtggaagcaagagcagcagctcatggaattaatatgtatcaagaaattgggtttcagaag
gacagccagggagagtacaaagcatcccagtgcatccacatggactgtctgaggtgggtg
aagagagacagttacctcccagtgggaagtcacaacctgaaagcagcagctaaagcaaaa
ctgggttacgatccggtggagctggaccctgaggagatgtgccggatggccacagaggag
cctcagaccttggccacctactcagtgtctgatgccgttgctacttactacatgtatatg
aagtacgtgcatcccttcattttcgccttgtgtactatcattcccatggagcctgatgag
gtgttaagaaaaggatctgggacactgtgcgaggcgctgctgatggttcaggcctaccat
gccaacatcatcttccccaacaagcaggagcaggaattcaacaaacttacagaagatgga
catgtgctggactcggagacctatgtgggaggccatgtggaagcactggaatctggggtc
ttccgcagtgacattccctgccgcttcaaaatgaatcctgctgcctttgacttcctcgtg
cagaatgtggagaagaccctgcagcatgccatcgaggaagaggagggtcttcccttggat
caggtcaccaacttccaggaggtttgtgatgaaatcaaggccaaactgaattccctgaag
gatgttcctaacagaattgagtgtcctcttatctatcatctggatgtgggggccatgtat
cccaacatcattctgaccaacaggttgcagccctccgccatggtggatgaggccacatgt
gctgcctgtgacttcaacaagccaggcgccaactgtcagcgccggatgacgtggcagtgg
agaggagagttcatgcctgccagccgcagtgagtaccaccgcatccagcagcagctggag
tcagagaagttccctcccttgttccctgatggaccaccccgtgccttccatgagctgtcc
caggaagaacaagccaagtatgagaaaaagcgcctagcagattactgccgcaaggcatac
aagaagatccatgtcaccaaggtggaggagcgagtcaccaccatctgccaacgagaaaac
tctttctatgtggacacggtgcgagcattccgggaccgccgatatgagttcaaggggctg
cacaaggtgtggaagaagaagctgtctgcagcagtggagacaggagatgcctctgaagtg
aaacgctgcaagaacatggagatcctctatgactcccttcagctggcccacaagtgcatc
ctcaactccttctatggatatgtcatgcggaaaggagctcgctggtattccatggaaatg
gctggcattgtctgtttcacaggggcaaatatcatcacccaggccagagagctgatcgag
cagattgggagacctctagaactggataccgatgggatttggtgtgtccttcccaacagc
ttcccagagaattttgtcatcaagtcaaccaatatcaagaagccaaaagtaaccatctct
tacccaggtgccatgctgaacatcctggtgaaggaaggcttcacaaatgaccagtaccag
gaactgcaggatccagcctcgctcacctacgtcacgcgctcagagaacagcatctttttt
gaagtggatggtccatacctagccatgatacttccagcctccaaagaggagggcaagaag
ctgaagaaaaggtatgctgtgttcaatgaggatgggtccctggctgagctgaaggggttt
gaggtgaaacgccggggagagctgcagctggtgaagatattccagtcgtctgtgtttgaa
gcctttctgaaaggcagcaccctggaggaggtctacgcttctgtggccaaggtggccgat
tactggctggatgtgctctacagcaaggctgccaacatgcctgattcagagctgtttgag
ctcatctcagagaaccggtccatgtcacgcaagctggaggactacggggagcagaagtcc
acctccatcagcactgccaagcgcctggcagagtttttgggggaccagatggtgaaggat
gcagggctgagctgtcgcttcatcatttccaagaaaccagaaggatctcccgtcaccgag
agggccatcccccttgccatcttccaagccgagcccagtgtgcgcaaacactacctccgg
aaatggctgaagagcccctcgctgcaggacttcaacatccgtgcgatcctggactgggac
tactacatcgagagactgggcagcaccatccagaaaatcatcaccattcctgcagccctg
cagcaggtaaagaacccagtgccacgggtccgacacccagactggcttcacaagaaactc
ctggagaagaatgatgtgtacaaacagaaaaaaatcaatgagctttttgtttcagaaggc
aagaaacagattcttgccaacccacctgtggaggggacacccagctcacaggtccgtgac
atagaagactttggggctgtcaagatccctctgccactggttccaattgcaaataagcgg
aagcgcatccctgcagcggaggaaagccaagagctgtcccaggacctggagctgtcccag
tcctggcgggagattctgggcccacctccatcccttggcaccaccaaggaggagcgtctg
gtctggctgcgcttccatcagaagaagtgggagctgcaggctcggcagcggcaggagcgg
aggaagaggcggcggctggaggatggtggggtggtggcaggtggaggagtggtccgtgat
gccctctccaaagggctgagcagttacctgcgccgaacagcgcgcagcatcctggacttg
ccctggcaggttgtgcagatcgctgagaccagccagcctgggctgttccggctgtgggcg
gtgatagggagcgacctgcactgcatcaagctgagcatcccccgcgtcttctatgtcaac
cagcgtgtcccaaagcctgaggagggaacagcctacaggaaggtaaacaggatcctgccc
cgctcaaacttagtttacaacttgtacgaatactctgttcctgaagacatgtaccaagag
cacatcaatgaaattaatgcagacctctctgctccagacatcgagggagtgtatgagaca
caggtgccactgctcttccgtgccctgatccacctgggctgtgtgtgcatggtcagcagg
cagcttgtccggcacctggcagggcgagaggctgaaaccttcaacatcgagcacctggag
atgcgctcactggctcagttcacttacctggagcctggaagcattcgccacatctacctg
taccacagctcccagggcagcaaggcagtcctgggcctcttcatcccctcacagcgcaag
gctgccgtctttgtgctggacaaggtacgcagcaaccagatgccaaacctcaccaccttg
ttctcggtggagcgcacggctctgctggaaaaggtgggcaaggagctgttgcccccagac
aaacacaccttcgaggtgcgtgctgagaccgaccccaaggccatctacagaggtgtccag
cggctgctcttgggctacaaggatgagcgccggggccccacgttggtggctgtgcagtcc
aactggggcctgaaacagctggcgagtgggatccccatcattgaggagttccccttggtc
cccatccggctggtagatgacatcagctactcggtcctggactggcagcgccatgccgcc
cgccgcatgattcgccactacctcaacctggacacctgcctttcccaggcttttgagatg
agcaggtactaccacatccccattggaaacctccctgatgacatctccaccttcggctct
gacctgttcttctcacgccaccttcatcgtcacaaccacctgttgtggctgtcccccaca
gcccgccccgacctgggggggaaggaggctgatgacaaccgcctggtcatggagtttgat
gagagagcctcagttgagatcaacaaccctggctgctactccacagtgtgtctggagctg
gacatccagagcctggctgtgaacaccgtgttgcagtcccaccacgtgaatgacatggaa
ggaggctccagcatgagcattagcttcgatgtgattcagcaggcatccctggaggacatg
gtcacagggaaccaagctgccaacatcccagccagctatgatgagactgctctctgctcc
aacactttcaggattttgaagagcatggtggtgagctgggtgaaggagattacgcagtac
cacaacgtctatgcagacaaccaggtcattcacttttaccgctggctccgctctccttcc
tccctgctttatgacccagcactgcaccgcatgctccacaacatgatgaagaagcttttc
ctgcagctggtggctgagttcaagcgcctgggctcctctgtggtctacgccaatttcaac
cgcatcatcctgtgcaccaagaagcggtacattgaggatgccatcagctacatggagtac
atcatcaacagcatccactccaaggagatcttccactctctgaccatctcattctcccgg
tgctgggagttcctgctctggatggacccagcaaattatggaggtatcaagggaaaagtg
gattctcgcatccactatggggagaaggacaccagcaagacgttggaggaggagagtgag
gaggaagaggaggaggaggaggtggtgagggaagaagaggaggagaaaggggagccagat
gtggaggagctgctggagaacaactggaacattgcgcagttcctgccccaggccggctcc
tgccagagctacttcttgatgatcatatcagcctacatcgtggctgtgtaccacagcatg
aaggaggaactgcggcgtaacacccctgggagcacccccatcaagaggaggagcaccagc
caggtgtcccaggaggctctgggggagctgagggccatgcctggcatgatcaccttctca
caagattacgtggccaatgagctcacccaaagcttcttcaccatcacccagaagatccag
aagaagatggctggttcccagaatgccacagagccctcagacatgttcccagtcctgcct
ggctcctacctgccactcaacaacccagctctggagttcatcaaatacgtctgcaaggtc
ctctccctggatgccaacataaccaaccaggtgaacaaactacgccgggacctgctgcgc
ctcatcgaggtgggcgagttctcagaagcagcccagtttcgggacccttgccgctcctat
gtgcttcctgaagtcatctgcaggaactgcaacttctgcagggacttggacctgtgcaag
gacactgccctttcccaggacaggttggtgctgcccggctggctctgccccagctgccat
gtgcagtatgatactgatgccattgagatggcactggtggaagctctgcagaagaagctg
atggcctttgtcctgcaggacctggtgtgcaaaaagtgtcatggtgtgaaggagacacac
atgcctgtgtactgcagctgtgctggagacttcaccctcaccatctcctcccaggtcttc
atggaccatgtccgtgtcttccagaacattgcccggcactatggcatggcctacctgctg
gaaaccattgagtggctgctgcacaccaacctccagctccagcagtga
DBGET
integrated database retrieval system
