Pyrgilauda ruficollis (rufous-necked snowfinch): 121365326
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Entry
121365326 CDS
T07608
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121365326 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pruf03400
]
121365326 (MSH2)
DNA repair and recombination proteins [BR:
pruf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121365326 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
121365326
NCBI-ProteinID:
XP_041345360
LinkDB
All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVVQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQALLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSAINDEYIRNREEYEEAQNAIVKEIINIASGYAEPIQSMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVREGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQEFLCQVKALPLTD
MSEEDIKVKLKQLRSDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactgagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaggaagttctctttgcc
aacaatgacatgtccacagccatcggggttgtgggggtgaagctgtctgctgctgatgga
cagagagtagtaggagtgggctatgttgacactacactgagaaaattgagtgtttgtgag
ttcccagataacgatcagttctccaaccttgaagctctactggttcaactgggcccgaag
gagtgtgtgctgccaggaggagagactgcaggagagatggggaaactgagacaagtcgtt
cagaggggaggaattctgattacagacaggaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaatcgcttgttgaaatcaaaaaaggaagagcagctgaacagtgcagca
ctgccagagatggaaaagcaggttgctgtttcgtctttgtcagctgttatcaagtttttg
gagctgctgtcagacgagtctaattttggacagtttgagctgactacttttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgcaaatactgcacagtctctagctggtttactgaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagaactacgtcagtgccttcag
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgttaccgaatgttccaggctatcaatcaactgcctaatgtt
gtacaagcattagaaaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttaatgatatctgctctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaaaatgaatgaactggaagaaaaaatgcaggccttactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaattca
cagtttgggcatcactttagggtaacttgtaaggaggaaaaagctctccgtaacaattcg
aaatatggaatcattgatacacagaagaatggtgtgaaatttactaacagcaaactgagt
gccatcaatgatgaatatataaggaacagggaggagtatgaagaggctcagaatgcaatt
gttaaggaaatcatcaacattgcttcaggttatgcagagcccatccagagcatgaatgat
gtgatagctcagctggatgccattgtcagctttgcccacgtgtccaacggagcccccgtg
ccctacgtccggcccgttgtcctggagaaggggcagggcaggattgtgctgaaaggtgcc
aggcacccctgcatcgaggtgcaggatgaggtggccttcatccccaacgacatcaccttt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaaca
tacatccgacagacaggggtgattgttctcatggcccaaattgggtgttttgtgccctgt
gagtctgcagaaataaccattgtggattgtatcctggctcgggtgggagcaggagacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcctcaatccttagg
acagcaactgagaactccctgataatcattgatgagctgggaagaggaacttcaacctac
gatggctttggcttagcctgggctatctcagaatacattgccagcaaaatctgtgggttt
gccatgtttgccacacacttccatgagctcacagctcttgctgaccaagtgccaacagta
aataacctccatgtcactgctctgaccagcgatgacacgctgaccatgctgtatcgtgtc
agggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggaatttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacattaaagtcaagttgaaacagctgagaagtgatgtattggcaaag
aacaacagttttgtgaatgaaataatttctcgaaccaaagttacatcatga
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