Pyrgilauda ruficollis (rufous-necked snowfinch): 121365659
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Entry
121365659 CDS
T07608
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121365659 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121365659 (XAB2)
03041 Spliceosome [BR:
pruf03041
]
121365659 (XAB2)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121365659 (XAB2)
Spliceosome [BR:
pruf03041
]
Complex B
Other components
Prp19-related factors
121365659 (XAB2)
Complex C
121365659 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_PRP39_C
TPR_19
TPR_14
TPR_12
TPR_16
CCDC84
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
121365659
NCBI-ProteinID:
XP_041345956
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
PEEAEQYVAYLRSVGRLDEAAQVLARLVNDERFVSRQGKSNYQGTWGVRDFTQVFDSYAR
FEESVIAALLDTQAQLGHGQDEEVELELRLARFERLMARRPLLLNSVLLRQNPHNVHEWH
KRVALHQGQPDKIIQTFTEAVRTVDPQRATGRPHELWVAFARFYEDNGQLDDARSILSRA
TRVRFRRVEDLAAVWCEFGELELRHQRHQEALSVLRVGKPKTGVQARIALFQWCHHAHVP
IVPSVPAGVRTRIALFRWCPRVPNVPVSPQAYECGIALFRWCPHAHAYERGIALFRWCPH
AHVPGVPMPMSGGTELFGVTHTRPIYQRAIEVLGDDAARELCLRFADMECKLGEVDRARA
IYTYCSQICDPRITGSFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQML
KVSGSATGTGSWRGTGEGAGTALAQHHRGTEEGTGVAPGGARGEAPLSLQGNPEEIDLDE
EGEEPDVAPPSRKLPFLPRKLLCHPPEVTLPARKLVSFPRKLLSRLPEVGYSH
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
cccgaggaggccgagcagtacgtggcctacctgcgctccgtgggccgcctggacgaggcc
gcgcaggtgctggcccggctggtgaacgacgagcgcttcgtgtcccgccagggcaagtcc
aactaccagggcacctggggggtgcgggatttcacgcaggtgttcgacagctacgcgcgc
ttcgaggagagcgtcatcgccgcgctgctggacacgcaggcgcagctgggccacggccag
gacgaggaggtggagctggagctgcgcctggcgcgcttcgagcggctgatggcgcggcgg
ccgctgctgctgaacagcgtgctgctgcgccagaacccgcacaacgtgcacgagtggcac
aagagggtggccctgcaccagggacagcccgacaagatcatccagacgttcaccgaggcc
gtgcgcacggtggatccccagcgcgccaccggccgcccccacgagctctgggtggccttc
gcgcgcttctacgaggacaacgggcagctggacgacgccaggtccatcctgtcccgtgcc
acccgggtgcggttccgccgtgtcgaggacctcgccgccgtctggtgcgagttcggggag
ctggagctgcgccaccagcgccaccaggaggcgctcagcgtgctgcgggtggggaaaccc
aaaacgggcgtacaagcacgcatcgcgctgttccagtggtgtcaccatgcccatgtcccc
attgtccccagtgtccctgcaggtgtacgaacacgcatcgcgctgttccggtggtgtccc
cgtgtccccaatgtccccgtgtccccgcaggcctacgagtgcggcatcgcgctgttccgg
tggtgtccccatgcccatgcctacgagcgcggcatcgcgctgttccggtggtgtccccat
gcccatgtccccggtgtccccatgcccatgtctgggggcactgagctcttcggggtcacc
cacacgcgccccatctaccagagagccatcgaggtgctgggtgacgacgcggcgcgggag
ctgtgcctgcgcttcgccgacatggagtgcaagctgggggaggtggatcgggcccgcgcc
atctacacctactgctcgcagatctgcgacccccggatcacgggcagcttctggcagacc
tggaaggagtttgagatccgccacgggaacgaggacaccatccgggagatgctgcgcatc
aagcgcagcgtgcaggccacctacaacacccaggtgaacttcatggcctcgcagatgctc
aaggtgtcgggcagcgccaccggcacagggtcatggaggggcacaggtgagggtgcaggt
acagcactggcacagcaccacaggggcaccgaggagggcacaggtgtggcaccaggaggg
gcacggggagaggcgccgctgtcgctgcaggggaaccccgaggagatcgacctggacgag
gagggggaggagcccgacgttgctcctcccagccggaagttgcccttcctcccccggaaa
ttgctctgccacccaccggaagtcactctccccgcccggaagttggtctctttcccccgg
aagttgctctcccgcctaccggaagtaggttactcccactga
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