Pyrgilauda ruficollis (rufous-necked snowfinch): 121365847
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Entry
121365847 CDS
T07608
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03440
Homologous recombination
pruf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121365847 (PALB2)
03460 Fanconi anemia pathway
121365847 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pruf03400
]
121365847 (PALB2)
DNA repair and recombination proteins [BR:
pruf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
121365847 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
121365847 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
121365847
NCBI-ProteinID:
XP_041346276
LinkDB
All DBs
Position
Unknown
AA seq
1324 aa
AA seq
DB search
MEAPPAAAALSGADKEKLREKLALLRREYSETVIRLRRARRAERARSHGRRERSPTGGSR
GERGASGLQCADPDCSRDNTSPSADRDGPSQLQTKTGSDADTEKTSVTLKHVPEFSSDEV
SPQDSSRAESFQASQENLCCGIIRPVPVEKKPQTSRGMMKLRRRTKALESKGGESVHDVH
LISAGEMMKNQTASAEDLQSPVFRHSSVSRTEEPAQRAPGTVLVQGERNSFAPDAASGLV
QDVFEGSVTAGEPELSPHALRDHRDILQPESSRAVATPDRHEQCSQPGDSVLLDPRGDGG
EESPSGIKQPEGQSLCEDQGELRGLLDLMSANEIFPDSRNNTITEESKKHEGHPSDTNTL
SPCPADRALDTAEELLENQQLEIESRLSPADKAAAPEATLSSCTVVEGLLFPVEYYVRTT
RRMASCQRKVDLDAVILSQLGRSKKGQRSKCKQKDANPNQPSQERAEGDLEPGPFPFLGA
ENDQANSSSSQKSLPASSNSSSTSLESISQKSITSTRQEQRQSQRKQKGRRKSACKASMH
PVSQELIESQDPTVANESSALLSNENQSEKENCDANLERSSSDEKRLSGTAALCSAGPGV
PAATQPAGPEPGRCHKALLEQVQNPVHSSDSLSPASGTASRVGHEEASAAVCQGDKHAVR
RVKRQRGAEQLPGVSVPLRRSLRCSARHRPPTGSTDDSSRGCSSPMGSQGPAALELPAVD
PDTRGSLFSFRSLQWLVPKLGIRDFHLPNEEFGALKLEKLKSPPVNDLEHFVSGDGVAPE
DTQDAQMKPKEKSLRSNLISPSKTGLPELPCVESLTSKKELSTHELLFTPMGTVLAEAPT
HPEISSSVFPAVGATPGVLPSVHTEVFPDTPSVPALPATPPSPRGAAALLLGDVAHRDPA
VPLHPDSCAAGAARNQEEQGTALPSAAERGPENKSDETVSLEKHQQPENKEQECCRVSPE
QKKDVAEQLTAVLPDGPREESLQFVSELKDCSCSGAVDVSAVWWAAAGCRELRVVTASES
AVSLWEPRAPACWGRVYTWHLREIPVIQIVPLPDTCNLVCVALGELEIGEIRLLLYSSET
DSFKHSLVKTGNIKAVVGLKDWRLVSSSKTMQEQQVEMVSLSETGGSPFRSKDRQTLMSP
EETVTAFAEVEGMREALVGTTAGNSVVVWNLKTGQLLRKMHVGYSYPASICHRAYSDSGL
LFVVVSHPHAEESESCGSPAFRVVAFNPRTGRSAGVMLSCLPPGPAGRYLEGDVWDTAGA
AVLTSGAVAVWDLLRGRCTAVLPPGPAGRWALARWATGGAGLLAGRRDGTVHLYRYRAPQ
PGAA
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccgccggcggcggcggccctgagcggcgccgacaaggagaagctgcgggag
aagctggcgctgctgaggcgggagtacagcgagaccgtcatccggctgcggcgggcacgg
cgagccgagcgagccaggagccacggccggcgggagcggagccccacaggtgggagccgg
ggagaacggggcgcctcaggtctgcagtgcgccgatcctgactgttctagagataacaca
tctcctagtgctgacagagatgggccctctcagttacagactaaaaccggctctgatgct
gacacagagaaaacatctgtcacacttaagcatgttccagaattctccagtgatgaggtt
agcccacaggacagctcccgggcagaaagctttcaggccagccaggaaaacctgtgctgt
gggatcatcaggcctgtccctgtggagaaaaagccccaaacctcccgaggcatgatgaag
ctgcggagacggacaaaggctctggaatcaaagggaggggaatcagtgcatgatgtgcat
ctaatcagtgctggtgaaatgatgaaaaatcaaactgccagtgcagaggaccttcagtca
ccagtgttcaggcacagcagcgtctcacgcactgaggaacctgctcaaagggcacctggg
acagtgcttgtgcagggagaaagaaatagtttcgctcctgatgcagcatcagggctcgta
caggatgtgtttgagggcagtgtcactgcaggagagcctgagctgtccccacatgcactg
agggaccacagggacatcttgcagcctgagtcctcaagggctgtggccacacctgataga
catgagcagtgttcacagcctggagactctgttttacttgaccccagaggtgatggagga
gaagaatcccccagtggaataaaacagccagagggtcagagtttgtgtgaagatcaggga
gaattacgtgggctcctagatttaatgtcagcaaatgaaatatttcctgacagcagaaat
aacaccataaccgaggagagcaaaaagcatgaaggacatccaagtgacactaataccttg
agtccatgtcctgcagatagagctctggacactgctgaagaactgctggagaatcaacag
cttgaaattgagtcaaggctgtctcctgctgacaaggcagcggctcctgaggccacgctg
agctcttgcacagtggttgaggggctgctcttccccgtcgagtactacgtgcggacaact
cgccgcatggccagctgccagaggaaggtggacctggatgctgtaatcctcagccagctg
ggcaggagcaagaaaggtcagcgcagtaaatgcaagcagaaagatgcaaaccccaatcag
ccctcgcaagagagagctgagggtgatttggagccagggcccttcccttttcttggggca
gaaaacgatcaagcaaactcaagtagttctcagaaatcccttcctgcgtccagcaacagc
agcagcacttctcttgaatccatttctcagaaaagcatcactagcacacggcaagagcag
agacaatcccagaggaaacagaagggaagaagaaagtctgcctgcaaagcctccatgcat
ccagtgtcacaagagcttatagagagtcaggatcccacagtggccaatgaaagcagtgct
ctgctgtcaaatgagaaccagagtgaaaaggaaaactgtgatgctaaccttgaaaggtca
tcctcagatgagaagagactctctggtactgcagcactgtgctctgcagggccgggagtg
cctgcagctacccagccagcgggtcctgagccaggcagatgccataaggctctgttagag
caggttcaaaatccagtccacagcagcgattccctgagcccagccagtggcactgccagc
cgtgtgggacatgaggaagccagcgctgctgtgtgtcagggagataaacacgcagtgcgg
cgtgtgaagaggcagcgaggagctgagcagctccccggggtcagtgtccctctgcgccgc
tccctgcgctgctctgccagacacaggcccccgactggctcaacagatgacagcagcaga
ggatgcagcagtcccatgggttcacagggtcctgctgcccttgagctccctgccgtggac
cccgacactcgtggctccctcttctccttccgcagcctccagtggctggtccctaagctg
ggcatcagggacttccacttaccaaatgaggagtttggagcactgaaactggagaaattg
aaatctccccctgtgaatgacttggagcattttgtgtctggggatggtgtggctccagag
gacacacaagatgcacaaatgaagccaaaagaaaaaagtctcagaagtaatttgatttca
ccttccaaaactggattgcctgaactcccttgcgtggaaagcctgacttccaagaaggag
ctttccacccatgaattgctgtttactcccatggggactgtcctagctgaggctcccact
caccctgagatttcctcatctgttttccctgctgtgggcgcaaccccaggtgttttacct
tcagtgcacactgaggtattccctgacacaccttctgtacctgccttgccagcgacccca
ccttcacccagaggagcagctgccctgctcctgggggatgtggcacacagagaccctgct
gtgccactgcaccctgacagctgtgctgcaggggctgccagaaaccaggaggagcaaggt
acagccttgccttcagcagctgaaagaggtcctgagaacaaatctgatgagactgtgtcc
ttggagaagcatcagcagccagagaacaaagagcaggagtgctgcagagtttcacctgaa
cagaaaaaagatgtagcagaacagttgactgcagtgctgccggatggccccagagaagag
agcttgcagtttgtgtcagagctaaaggactgctcgtgctcgggcgcggtggacgtgagc
gccgtgtggtgggcggcagccggctgcagggagctgcgggtggtcactgcctccgagagc
gccgtgtccctctgggagccacgggcacccgcctgctggggaagggtctacacctggcac
ctgagagagattcctgtaatccagattgttcctctgccagacacctgtaacctcgtgtgt
gtagcactgggagagctggagattggagaaataaggctcttgctttattcttctgagact
gactcattcaagcactccctagtgaaaactgggaatataaaagcagttgttggactaaag
gactggaggctggtgagcagcagcaagaccatgcaggagcagcaagtggagatggtttct
ctctcagagacaggggggtctcctttcaggagcaaggacaggcagactctgatgtcccct
gaagaaactgttacagcctttgctgaagtggaagggatgagagaggccttggtgggcacc
actgcagggaacagcgttgtggtttggaatctgaaaacaggtcagctcctgaggaagatg
cacgttggttattcctacccagcttccatctgccatcgagcgtattctgactccggcctt
ctgtttgttgttgtaagccatcctcatgccgaagagagcgagtcctgtggaagcccagcg
ttccgcgtggtggccttcaacccgcgcacgggccggagcgcgggggtgatgctctcctgc
ctcccgcccgggcccgcaggcaggtacctggagggtgacgtgtgggacaccgcgggagcc
gccgtgctgacgtcgggtgcggtggccgtgtgggacctgctgcggggccgctgcacggcg
gtgctgcccccgggccccgcggggcgctgggcactggcacgctgggccaccggcggggcc
gggctgctggccgggcgccgcgacggcaccgtgcacctgtaccggtaccgggccccccag
ccgggagccgcctga
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