Planktothrix rubescens: PCC7821_00414
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Entry
PCC7821_00414 CDS
T09709
Symbol
sigC
Name
(GenBank) RNA polymerase sigma-C factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
prun
Planktothrix rubescens
Brite
KEGG Orthology (KO) [BR:
prun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prun03021
]
PCC7821_00414 (sigC)
Transcription machinery [BR:
prun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCC7821_00414 (sigC)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
CAD5917063
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Position
I:complement(433565..434818)
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AA seq
417 aa
AA seq
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MPATKIDAENNLNPSFQDYSEPDEVMNQDLEPDLDDLIDLEIENTSDVKLQKPNNNRRTT
DLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLVDLRDNAAEQDEGLINTYVRLIKTRD
KLSAQLGHRPSLERWATTAGVDVAELKPMLATGKRCWAEIAGLTVEELDQIQTEGIQSKD
RMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIRQ
GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIDDIAHELEMTPVQVREV
LLRVPRSVSLETKVGTDKDTELGDLLETEEVTPEEMLMRESLHKDLQNLLADLSSRERDV
ILMRYGLGDGHPYSLAEIGRALELSRERVRQIEAKALQKLRQPKRRNRVRDYLESLS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgccagccactaaaattgatgccgagaacaacttaaacccctcttttcaggactattct
gagcctgatgaggtaatgaatcaggatcttgagcctgatttggatgatttaattgatttg
gagatagagaataccagcgatgtcaaactccagaagcccaacaataatcgtcgtacaaca
gatttagttcgattgtatctccaagaaattggtcgggtgcgtctgttggggcgggatgaa
gaagtatcagaagcccaaaaggtacagcgttatctgaggttagttgacttacgggacaat
gctgccgagcaggatgagggactgatcaatacttatgtgcgattgatcaaaacccgggat
aaattatcggctcagttgggtcatcgcccatctttagagcgatgggcaacaacggctggg
gttgatgtagccgaactcaagccgatgttagcaacaggaaaaaggtgttgggcagaaatc
gcgggtttgaccgttgaggaattggatcagattcaaaccgaagggatacagtccaaagac
cggatgattaaagcgaatttgcgtttagtggtatcggtggcaaagaaatatcagaaccga
ggtttagaactactagatttaattcaagaaggaactttaggattggaacgggcggtggag
aagtttgacccgacccggggatatcgttttagtacctattcttattggtggattcgtcaa
gggattacccgggcgatcgctacccaaagccgcacgattcgtcttccggttcatattacc
gaaaaactgaataaaattaaaaaagcacaacggaaaatttcccaggaaaaaggtcgtacc
gccaccattgatgatattgcccatgagttagaaatgactccggttcaagtccgagaagtg
ttgcttcgggttccccgttctgtgtctttggaaacgaaggtaggaacggataaagatacg
gaattaggggatttactcgaaaccgaggaggtcacaccggaagaaatgctgatgcgtgaa
tctttgcataaggatttacaaaaccttttagcggatttaagtagtcgggaacgggatgtg
attttgatgcgctatggtttgggggatggacacccctattccctggcggaaattggtcgg
gcactggaattatcccgggagcgagtccgtcaaattgaggctaaagctctacaaaaactg
cgtcaacctaaacggcgtaaccgggttcgggattatttggagtctttgagttaa
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