Planktothrix rubescens: PCC7821_01233
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Entry
PCC7821_01233 CDS
T09709
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prun
Planktothrix rubescens
Brite
KEGG Orthology (KO) [BR:
prun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prun03016
]
PCC7821_01233 (rtcB)
Enzymes [BR:
prun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PCC7821_01233 (rtcB)
Transfer RNA biogenesis [BR:
prun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PCC7821_01233 (rtcB)
Prokaryotic type
tRNA splicing ligases
PCC7821_01233 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAD5930287
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All DBs
Position
I:complement(1330576..1331757)
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AA seq
393 aa
AA seq
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MPYETLNLSSPKPVLSWANHDLGSAETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMCAIKLPFIAEQMEGKLKKIRQEIEAAIPVGFDQNKHIEKA
VTNWQGWREFKDLHSKVQNLESKAIKQMGSLGGGNHFIELCLDEENNVWLMLHSGSRHIG
NMLAQNHIDTAKNLAKLAELKLPDPDLAYFVSGTPEFVAYWNDLQWAQHYAKFNRDIMMA
RFKRIVETAVAGGKPTKALLEVNCHHNYSEKEVHFGEEVYVTRKGAVRAAEQDYGIIPGS
MGAKSFIVKGKGNHDSYCSCSHGSGRLMSRSKAKKTFTLDDLIQQTEGVECRKDTGIIDE
IPGAYKSIDEVMKQQSDLVEVVATLKQILCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgaaacgttaaatctttctagccctaaacccgtcctatcttgggcgaatcac
gatttaggttcagcagaaaccaaaatggcgaaaaacgtcgcttctttgccctttgtattc
aagcacgttgctttaatgcccgatgttcacttaggaaaaggggcattagtaggttctgta
attgcgacaaaagaagccattattccggcggctgtgggggttgatattggttgcggaatg
tgtgcgatcaaattaccgtttattgctgaacaaatggagggaaaactaaagaaaattcgc
caggaaattgaagccgcaattccggtgggttttgatcaaaataaacatattgaaaaagcc
gtcactaattggcaaggatggcgagaatttaaagacctgcattccaaggttcaaaactta
gaatcaaaagcgattaaacaaatgggttctttagggggaggaaatcattttattgaactg
tgtttagatgaagaaaacaacgtttggttaatgttgcattccggttctcgacatattgga
aatatgttagcccagaaccatattgacacagcaaaaaacctggcaaaattagcagaactc
aaacttcctgatcctgatttagcttattttgtatcaggaactcccgaatttgtagcctat
tggaatgatttacaatgggcgcaacattacgccaaattcaaccgagatattatgatggca
cggtttaaacgaattgtagaaacagccgtggcgggagggaaaccaactaaagccttatta
gaggttaattgtcatcataattattctgaaaaagaagtacattttggcgaggaagtttat
gtgactcgtaaaggtgctgtccgcgcggcagaacaggattatgggattattcctggttcc
atgggggcgaaatcttttattgtgaaagggaagggaaatcatgatagttactgtagctgt
tcgcatggctcggggcgcttaatgtctcgaagtaaagctaaaaaaacctttactttggat
gatttaattcaacaaactgaaggagttgaatgtcgcaaagatacaggaattattgatgaa
attccgggggcttataaatccattgatgaagttatgaaacaacaatcagatttagttgaa
gttgtggctactttgaaacaaattctctgtgtcaaagggtaa
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