Planktothrix rubescens: PCC7821_01940
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Entry
PCC7821_01940 CDS
T09709
Symbol
crhR
Name
(GenBank) RNA helicase CrhR
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prun
Planktothrix rubescens
Pathway
prun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC7821_01940 (crhR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prun03019
]
PCC7821_01940 (crhR)
03009 Ribosome biogenesis [BR:
prun03009
]
PCC7821_01940 (crhR)
Enzymes [BR:
prun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCC7821_01940 (crhR)
Messenger RNA biogenesis [BR:
prun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC7821_01940 (crhR)
Ribosome biogenesis [BR:
prun03009
]
Prokaryotic type
rRNA helicases
PCC7821_01940 (crhR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrD-helicase
AAA_19
HEM4
Cas3-like_C_2
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAD5941561
LinkDB
All DBs
Position
I:complement(2087129..2088535)
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AA seq
468 aa
AA seq
DB search
MSPSFASLGISEERASYLETIGFSEPTTIQVEAIPHILSGRDVVGLAQTGTGKTAAFSLP
ILEQLDTSAKGVQALILTPTRELAMQVKEAIRKMTDDRSLYILTVYGGQSIERQIQRLQQ
GVQIVVGTPGRILDLLNRGNLKFDRIKWLVLDEADEMLSMGFIQDVEKILESVAEDRQTA
FFSATMEPSIWKLVKKFLKNPVTIKAENPKATPKRIEQRAYMAPRGWSKARALQPILELE
DPESAIIFVRTKQAAAELTTFLQAAGHSVDEYHGNLNQTQRERLLQRFRRRQVRWIVATD
IAARGLDVDHLSHVINYDLPDNAESYVHRIGRTGRAGREGIAITLIQPIDRRKLRLIERH
LNHNFTVLSIPKRSQIEGRYIERLQGRVQEALTGERVASFLPIVAQLSEEYDPQAIAAAA
LQLAYDQTRPSWLDSEFPAEEEEMPLPSSKPKLNRRVVPRPSVSQGVE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagtccatcttttgcaagcttaggaatttccgaagaacgtgctagttatctggaaaca
ataggctttagcgagccaaccaccattcaagtcgaagcaattccccatattttgtctgga
cgggacgtggtgggactggctcaaaccgggacgggcaaaacagccgccttttcattgccc
attctggagcaactggatacaagtgcaaagggcgtacaagcgttaatcctgaccccaact
cgggagttagccatgcaggttaaagaagcgattcggaaaatgaccgatgatcgcagcttg
tatattttaaccgtttatggcggtcagtcgattgaacgacaaatccaacggttacaacag
ggcgtgcagattgttgttggcacacctggacggattttagatttactcaaccgggggaat
ctgaaatttgaccggattaagtggttagtgttggatgaagccgatgaaatgttaagcatg
ggctttattcaggatgtagaaaaaattctggaatccgttgctgaagatcggcaaacggcg
tttttctcggctacgatggagccttcgatttggaaactggtgaagaaattcctcaaaaat
ccagtcaccattaaagctgaaaaccccaaagctactcccaaacgcattgaacagcgtgct
tatatggctccccgtgggtggtcaaaagcccgggcgttgcaaccgattttagaattagaa
gatccagaatcagcgattatttttgtccgcactaaacaggctgctgcggagttaactact
ttcctgcaagccgcaggtcacagtgttgacgaatatcatggtaacttgaaccaaacccaa
cgggaacggctgctacaacgcttccgccgtcgtcaggtgcgttggatcgtggccacggat
atcgctgcccggggattggatgtggatcatctcagccacgtgattaactacgatttaccc
gataacgccgagagttatgtgcaccggattggtcgtacaggtcgcgccggacgggaaggg
atcgcaattacgttgattcaaccgattgatcgccggaaactgcggttaattgagcgccat
ttgaatcataactttacggtgttgtcgattcctaagcgctcgcaaattgaaggccgttat
attgaacgacttcaaggacgagtgcaggaagccttaacgggtgaacgggttgcctctttc
ttaccgattgtggcccaattgagtgaggaatacgatccccaggcgatcgccgcggcggct
ttacaactggcctacgatcaaactcgccccagttggttagattccgaattcccggctgag
gaagaagaaatgccactcccgtcttctaaaccgaaattaaatcgtcgggtggttcctcgt
ccttcggtgtcccagggcgttgaatag
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