Psychrobacter sp. PRwf-1: PsycPRwf_0352
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Entry
PsycPRwf_0352 CDS
T00541
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw02020
Two-component system
prw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PsycPRwf_0352
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PsycPRwf_0352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prw03021
]
PsycPRwf_0352
Transcription machinery [BR:
prw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PsycPRwf_0352
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Ferritin
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ABQ93307
UniProt:
A5WCB6
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Position
424961..426706
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AA seq
581 aa
AA seq
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MISTSFNLGFNLSTTQKLTPQMQQAIKLLQLSSLELEQEVQMKLDSNPLLERVEDDDIDA
EDFNSIEELTRLELDAEAQKEVYDPYDDDYGLEYQEGATEDVFSELDGDGLGNLGDLNDL
NDLNENALDDTNKTEGDIEQNQALISITTTADNDLKAEASNLDTSLGELPIDTEWDDIYT
HSPTGLAAPDTQGMSDYQGATSVSLQDHIRWQLTFSKLSSVQSLIADYLIDALDDHGFIQ
IDMAELKDSFDEMASFYQWQQKIELEHIQQVIELIQSCEPLGVGARNLAESLQIQLRALD
ENTPYMRQALRLLDEHQLLVSNNIKELMSRTGLKNNEISPALELIRTLNAAPGLAFSKAQ
PDYGSTPEVYDIPDVIVQLVHNQGGGEAVWKVELNPETLPKLRINQQYASLVKRGDDSPD
NVYLRDNLMDARLFIRSIEERNHNLLKVATCIIKMQQDFLLQGATAMKPLILKEVAEEVG
LHESTVSRLTTSKSILTPQGLFSLKHFFSSHVSSDQGDVSSTAISAMIEALIDAEDPKKP
MSDSAIKQHLQQQGIDIARRTVAKYREAMNIGSSTQRKLKF
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgataagcacttcctttaatttaggctttaatctatccaccacccaaaagctgacacct
cagatgcagcaagccattaagctgttgcagttatcaagccttgagcttgagcaagaggtg
cagatgaagcttgatagcaatcctttattagagcgggtagaggacgatgatattgatgct
gaggattttaacagtattgaggagctgactcgattggagcttgatgccgaagcacaaaag
gaggtgtatgacccttatgatgacgactatggcttagagtatcaggaaggggcgactgag
gatgtatttagcgagttagatggcgatggcttaggtaatttaggtgacttaaacgactta
aacgacttaaacgagaacgcgctggatgacacaaataaaacagagggggatatagagcaa
aaccaagctttaatcagtattaccaccacagcagataacgatcttaaggctgaagcatca
aacctagacaccagcctcggtgagctgccgatagacactgagtgggatgatatctatacc
catagccccactggacttgccgcaccagatacccaaggcatgagcgattatcaaggtgca
acctccgtcagtttacaagaccacattcgctggcagctcacttttagtaagctgtcctca
gtgcagtcgcttatcgctgattatttgattgatgctttggatgaccacggttttattcaa
atagacatggctgagctaaaagacagctttgatgaaatggccagcttctatcagtggcag
caaaaaatagagttagaacatatccaacaggtcatcgagctgattcaaagctgtgagcca
ttgggagtgggggcgcgcaatttggccgaatcattacaaattcagctgcgtgcactggat
gagaataccccttatatgcgtcaagcgctgcgtctgctagatgagcatcaactgcttgtg
agtaacaatattaaagaattgatgagtcgcacgggtctaaaaaacaatgaaatcagcccc
gcactcgaattgattcgtaccctgaatgccgcgccagggttggctttttctaaagcgcag
ccagactatggcagtactcctgaggtgtatgatatccctgatgtgattgtacaactggtg
cataaccaaggcggcggtgaggcggtgtggaaggtcgagctgaatccagagaccctgcct
aagctaagaatcaatcagcaatatgcaagcttggttaagcgcggggatgacagcccagac
aacgtgtatctgcgtgataatctaatggatgcccgcttatttatccgaagcatcgaagag
cgcaatcacaacctacttaaagtggctacctgcattataaaaatgcagcaagatttttta
ttacaaggtgccactgccatgaagccattgattttaaaggaagtcgctgaagaggtaggt
ctgcatgagtctaccgtatcacggttgaccaccagtaaaagcattttaaccccgcaaggg
ctgttctccctcaagcacttcttctcctcccacgtctcaagtgatcaaggtgacgtctcc
tccacagccattagtgccatgattgaggcattaattgacgctgaagaccccaaaaagccg
atgtcggacagtgccatcaagcagcatttacagcagcaaggtatagatattgctcggcgc
acagtggccaaatatcgagaagccatgaatattggctcttctacacagcgcaagttaaag
ttctag
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