Psychrobacter sp. PRwf-1: PsycPRwf_0479
Help
Entry
PsycPRwf_0479 CDS
T00541
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PsycPRwf_0479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prw03019
]
PsycPRwf_0479
03009 Ribosome biogenesis [BR:
prw03009
]
PsycPRwf_0479
Enzymes [BR:
prw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PsycPRwf_0479
Messenger RNA biogenesis [BR:
prw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PsycPRwf_0479
Ribosome biogenesis [BR:
prw03009
]
Prokaryotic type
rRNA processing factors
PsycPRwf_0479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Mre11_C_bact
Motif
Other DBs
NCBI-ProteinID:
ABQ93434
UniProt:
A5WCP3
LinkDB
All DBs
Position
complement(569147..573253)
Genome browser
AA seq
1368 aa
AA seq
DB search
MKRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY
GSKRQGFLPVREIASEYLSGNPREENIRKLIKEGDELIVQVEKEERGNKGAALSTYVSLA
GRYLVLMPNNPKGGGISRQISGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQEDLQHD
LNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEAETF
IKAVMPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVSIDI
NSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVEKRLV
EATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSLSIM
RQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHLESPNFN
IHFNHHGFAPASYERVTDTQQQETSGLGYEVDWQTAESERPEQQPVRQPRKTAPQASADT
SKPAEAAKAATPVANTAAKPQQPAEAQVEQAKPAAVAWLSNLFAPTPQAQMSATVSSADA
AQAIEAIVNTGAQSRGAFGQVSAAPAAAPVASATVAAKPASAPTASEQANSADDTETDND
KDRRRSRNNRSRNKYDKRSKPDNRRRSQDKEDKKSADTADKSDNRQVAEQEPNKELPKRE
PNSKRESRGAIERGDTKQPNKASSDNRSDRNQKTDEKSRSADKNGSRSNSERPVDPNEVN
LRVTEAQNTLKKSEVVHICLDDAKSSQKSAQAQSKPEVQQASPNNRAVTRQQSTQAEPQA
DNSKAAKSEASRDHKPSDDASAAQPNTAAVTEVAEPASNMKDGAAQGDQKQKADTKTESV
VAPSVSKDAEPKADQPAKVQASTAQSEPAEAVIDTEATPAKAAANNAAHAARSPEEATAQ
PVVASEDQAPETASLSFDAKELFANRYVAAQKYGQASNDPRVIKASLEAQAQSFAAPEAD
EPELLAPMATITGSVGQFIHTHLAQPRMRLAKDGVIACFLAALNAHKQTSGSTTKPAAKR
KAAANNSKQHAKAFSFVNYGYQSLSPSYLERFAQMTSAVATHTIEQGKTEVEPSPIGARA
SNDPRGQHPDYTAPDAASDAVTQPLDNGLTAGDVSDTVEATPAQAEAAPQEVKDLAQLLT
LNVGHFIREMLGQEGVDSIAAGHTEAAFLKALRQPLPVAQSAQSANDTLLEDTDSSAEAT
VQQVADEAHVTETIEQPATALVNEPQADAISDDSTEMLQAAHHAANTSNKTSIETYKSMI
ENISEQLLPQTGLLNLTSPKVPKARSRKVKEDAKKTTATPKGSTDSDS
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatactgattaacgccacccacaacgaagaagttcgtgtcgccttatgtaaa
ggcaaccatttatacgacttcgatcttgaaaaccgcacccgcgaacagaaaaaagccaac
atctataaaggccatgtcacccgcgtagagccgtcattagaagccgtatttgtcgaatat
ggctcaaagcgtcagggcttcttgccagtgcgcgaaattgccagcgaatatctgtcaggc
aaccctcgtgaagaaaacatccgcaagcttatcaaagaaggcgatgagcttatcgtgcaa
gtcgaaaaagaagagcgtggtaacaaaggcgccgccctatctacttatgtgtctttggcc
ggccgctatttggtattaatgccaaacaacccgaaaggcggcggtatctcacgtcaaatc
tcaggcaagctgcgtgaagacatgaagcgtatgctgggtaatttagatttgccaaaaggg
atgagcgttatcgtacgtactgctggtatcggcaaaacccaagaagatttgcaacacgat
ttaaatcacctgcttaatatctggaacgccattcaagatcaaaacaaaaaatacgcctct
cctcgtcttgtacatcaagaagcgggggtggtgactcgtgcggtacgcgattatctacgt
gatgacatcactgagatctggattgataatgaagaggcattcattgaggctgagaccttt
ataaaagcggttatgccgactcaaattgataagctgcgcaagtacactgactttgagcct
atgttctcaagcttcaacgttgagcgccaaattgaaaccgcttatcagcgtgaagtacgt
ttgccctctggtggctcaattgttattgaccaaaccgaagccttggtctctatcgatatc
aactcagccaaatcgactaaaggtgcggacgtcgctgagacagcctatcacaccaactta
gaggcagccgatgagattgcccgtcagctgcgtctgcgtgatatgggcggcctaattgtt
atcgacttcattgatatgaacgacagcaaacatcaaaaagaagtggaaaaacgtctggtt
gaagccaccaaatacgaccgtgctcgtgttcagtttggggagatttcacgctttggtctg
atggaaatgagccgtcagcgcctacgtccttctttagaagagtccaccggctatatctgc
cctcgctgtcatggcaacggtatgattcgtgatttacgttcgttatcactgtctatcatg
cgtcaaattgaacaaacagccttaaaagagcgtcatggtgaggtgcaagctgaagtacct
acggatatagcagcatttttattaaatgaaaagcgtgaaagcttggtgtaccttgagcaa
gacagcggcacccgcattactatcttgccacatgcccaccttgagtcgccaaacttcaat
atccactttaaccaccatggcttcgcacccgcaagctatgagcgtgtgaccgatactcag
cagcaagaaaccagtggcctaggctatgaagtggactggcaaactgcggaatctgagcgt
ccagagcagcagcctgtgcgtcagccgcgcaaaacggcgcctcaagccagcgccgatacc
agcaagcctgccgaggccgctaaagccgctactcctgtggccaacaccgctgccaaacca
cagcagcctgccgaggcccaagtagaacaggccaaacctgctgccgtggcttggctatca
aacctatttgccccaacaccgcaagcccagatgtcagccacagtaagcagtgctgatgcc
gctcaagcgattgaagccatcgttaataccggtgcgcaaagccgaggcgcttttggtcaa
gtaagcgccgcgccagccgctgcccctgtggcttccgctactgtagcggccaaacctgcc
tctgcccctaccgctagcgagcaagccaatagcgcagatgacactgaaaccgataatgac
aaagaccgtcgccgcagccgcaacaaccgcagccgtaataaatatgacaagcgtagcaag
cctgacaaccgtcgccgcagccaagacaaagaagacaagaagtcggctgatacagcagac
aagtcagacaaccgtcaggtagctgagcaagagcctaacaaagagctgcctaagcgtgag
cctaatagcaaacgtgaatcacgtggtgctatagagcgcggtgacaccaaacagcctaac
aaggccagctcagacaaccgctctgatcgtaatcaaaaaacagacgaaaagtcacgcagc
gccgataaaaatggcagccgctcaaactctgagcgtccggttgaccctaatgaggtgaac
ctaagagtgactgaagcacagaacactttgaaaaaatccgaagtagtgcatatctgttta
gatgacgctaaatcaagccaaaaatctgcacaggctcaaagtaagcctgaagtgcagcaa
gcgagccctaacaatcgcgccgtaactcgccagcaaagcactcaagccgagcctcaagct
gacaactcaaaggcagctaagtctgaagcttcgcgtgaccataagccaagcgatgacgca
tctgcagctcagcctaacacggcagctgtcacagaggtggccgaaccagcttctaatatg
aaagatggtgctgctcaaggcgatcaaaagcaaaaagccgataccaagactgagtcagtc
gtggcaccctcagtaagcaaagatgctgagcccaaagcggaccagccagctaaggtgcaa
gccagcacagcccagtctgaaccagctgaagcggtgattgatactgaagcgactccagcc
aaagctgccgctaataacgctgctcacgctgcaagatccccagaggaagcaactgcacag
cctgttgtagcctcagaagatcaggcccctgagacggcaagcttaagctttgatgccaaa
gagctgtttgccaaccgctacgtggcggcgcaaaaatatggtcaagccagcaatgacccg
cgtgtgatcaaagcctctcttgaagctcaagctcagtcttttgcagcgcctgaagccgat
gagccagagctcttagcaccaatggctacgattacaggctctgtgggtcaatttatccac
actcacctagcccagccacgtatgcgcttggctaaagatggggtaattgcatgcttctta
gcggcattaaatgcgcacaagcagacgtcaggcagtacaaccaagcctgctgcgaagcgt
aaagccgctgctaataacagcaagcagcacgccaaggcctttagcttcgtgaattatggc
tatcagtctttatcacccagttatctagagcgctttgcccagatgacctcagcggtagcg
acccataccatcgagcaaggtaagactgaagttgagccaagcccaattggtgcgcgcgcc
tcaaatgacccacgtggccagcatccggactatactgcccccgatgctgcctctgacgca
gtgacacagcctttagacaatggcttaactgcgggcgatgttagcgatactgtggaggcg
acaccggctcaagcggaggcagcgccacaagaagttaaggatttagctcagctacttacg
ctaaatgtcggccactttatccgtgaaatgctcggtcaagagggcgtggacagcattgca
gcgggacacactgaagcagctttcttaaaagccttgcgtcagccgctgccagtagcccaa
tcggcccaaagcgctaatgatacgctcttagaggataccgactcaagcgctgaggcaaca
gtgcagcaagtagcggatgaggctcatgttactgaaaccatagagcagccggccacagcg
ttagtgaatgagccacaagccgatgccatcagtgatgacagcaccgagatgttacaagca
gcgcaccatgctgctaatacgtccaataaaaccagtattgagacttataagagcatgatt
gaaaacatctcagagcagctgctgccgcaaacaggactgttaaatctaacctcgccaaaa
gtgcccaaagcacgctcgcgcaaggtaaaagaggatgccaaaaagaccacagccacccct
aaaggctccaccgatagtgacagctaa
DBGET
integrated database retrieval system
