Psychrobacter sp. PRwf-1: PsycPRwf_0770
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Entry
PsycPRwf_0770 CDS
T00541
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PsycPRwf_0770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prw03019
]
PsycPRwf_0770
Enzymes [BR:
prw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PsycPRwf_0770
Messenger RNA biogenesis [BR:
prw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PsycPRwf_0770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
ERCC3_RAD25_C
Ald_Xan_dh_C
LSDAT_prok
Motif
Other DBs
NCBI-ProteinID:
ABQ93722
UniProt:
A5WDI1
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All DBs
Position
919998..921149
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AA seq
383 aa
AA seq
DB search
MDEFITFADLSLSDSILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFL
ITIIEALLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGI
DYDKQIAALDKSYTDILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKR
LMRYMPPNTDRQSLLFSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEA
DKHQALIQILAQPETKKVIVFANRKDQVKRLYTKLSADHNVVMLSGDVDQAKRERYLDKF
KNGNAKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSE
DDAFNLPAIEAHLDRHLKLEQWG
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtttattacctttgctgatttgtccttaagtgacagtatcttacgctcagtc
aatgacttaggttttaccgagttgaccggtatccaagcgcagattttaccgcatacgtta
gctgggcaagatgccattggtcaggcacaaaccggaacaggtaagacagccactttttta
attactattattgaggcattactaaagcgcccatttgcagatgatgaaatgcgttatatt
ggcgagccaagagcgctgattttggcacccactcgagagttggccaatcagatctatgac
gatgccattgccttgactaaacacaccagcttacacagtgtgtgcgtgatgggtgggatt
gattatgataagcagattgccgcgctagataaaagctataccgatattttgattgccacc
cccgggcgcttgattgacttaatttacaaaggccatgtgtttttagatcgtattgaagcc
tttgtcttagatgaagccgatcgtatgctagatatgggttttattccagatattaagcgt
ttgatgcgttatatgccgcccaacaccgatcgtcaaagcctgctgttttcggccaccttt
aaccaagatgtgatgaatctagcctatcaatggcttatgaatccggtgttcgtagagatt
gagcctgagcataagaccagtgatttggttgagcagcatttttatctgttgaccgaagcc
gataaacatcaagcattgatccagattttggcgcagcctgagacaaaaaaggtgatcgta
tttgccaatcgcaaggatcaggtaaaacgcttatataccaagttaagcgcggatcataat
gtggtgatgctctcaggtgatgtggatcaagccaagcgtgagcgttacttggataaattt
aaaaatggcaatgctaaggtacttgtggcgactgatgtggcgggacgtggcattcatgtt
gatgacatcagccatgtggtcaattacaccttaccggatcagcccgatgattatgtacat
cgcatcggccgtactgggcgggccggccaaaaaggtatcagtattagctttgttagtgaa
gatgatgcctttaacctgccggccattgaagcgcatttagaccgccacttaaaacttgag
cagtggggctaa
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