Psychrobacter sp. PRwf-1: PsycPRwf_0790
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Entry
PsycPRwf_0790 CDS
T00541
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03410
Base excision repair
prw03430
Mismatch repair
prw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PsycPRwf_0790
03430 Mismatch repair
PsycPRwf_0790
03440 Homologous recombination
PsycPRwf_0790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prw03400
]
PsycPRwf_0790
DNA repair and recombination proteins [BR:
prw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PsycPRwf_0790
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PsycPRwf_0790
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PsycPRwf_0790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABQ93742
UniProt:
A5WDK1
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Position
942058..943893
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AA seq
611 aa
AA seq
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MLKLTPRFTGTLPDDLPACFTQMYQQAPTLTRLFLARGIQSDQDLDYGLSALLPAQGLSD
VDEAVTLMDEAIEAQRRILIVGDFDCDGATSTALMMRILSQMGAVVDFVVPDRFKYGYGL
TPEIVQLGIEQYQPDMIITVDNGISSHEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVN
PNQLGCSFESKALVGVGVAFYLLGRLAKYRREAGRSTAQVSRYLDLVALGTIADVGVLDH
NNRILVNHGLAAIRAGRCSLGILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRI
GIECLMADDMSDAKRLAFELDKLNKERRYVEGEMREQADEILRQLQPNSDRSQAQTTDEQ
SDDSDDSLKQQAESFTDKAQPRSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDT
QLDGQDAIKGSARSIPGIHIRDAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEA
FELQMQSVEASVFEEQQFTDGQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDGVFDVVQA
RILKDKHLKLSLKYPGVMYPIDAIWFNYDPKKWDYRAQQVHVLFELSINEWQGNQNIQLM
VKDVAVTQISP
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagttaacccccagatttaccggcaccttgcctgatgatttacctgcctgtttt
acccagatgtatcaacaagccccgaccctgacgcgcctatttttggcacgtggcattcaa
agtgaccaagacttagactatgggttatctgcgctactgcccgcgcaaggtctgagcgat
gtcgatgaagcggtgacgctgatggatgaggccattgaggctcagcggcgtattttgatt
gttggtgattttgattgtgacggagcgaccagtacggcgctgatgatgcgcatcctgtca
cagatgggtgccgtagtagattttgtggtgccggatcgttttaaatatggctatggcctg
acgcctgagatagtacagctgggtatagagcagtaccagccggatatgattattactgta
gataatggcatctcaagccatgagggggttgataaggccattgccaatggcattaaggta
attatcaccgatcatcacctcaccactaagagcaagcctaatgcccatgctgtggtgaat
cccaatcagctgggctgctcatttgagagtaaggccttggtgggcgtaggtgtggccttt
tatctgctcgggcgtctggccaagtaccgccgagaagcagggcgatcaacggcccaagtg
agccgttatttagacttagtggccttgggcaccatcgccgatgtgggcgtgcttgatcac
aacaaccgcatcttggtcaatcacggcttggctgcgataagagcagggcgctgctcgctg
ggtatattggcgctgcttgagctggcggggcgtgattaccaaaagatgagcgtacaagac
tttggcttcgtcattggcccccgtatcaatgcggcagggcgcatggacaatatgcgtatt
ggtattgaatgcttgatggccgatgacatgagtgacgccaagcgtttggcctttgagctt
gataagctgaacaaggagcgccgctatgttgagggcgagatgcgtgagcaggccgatgag
attttacgtcagctgcagccaaactcagaccgcagtcaggcacagacgactgatgagcaa
agtgatgatagtgatgatagtttaaagcaacaagcagagtcttttactgataaagcacag
ccgcgcagtttgattttgtatcaagacaactggcatcaaggggttattggtattgtggcc
ggccgccttaaagaaagccattatcgacctgccattgtatttgctccggcagatgatact
cagcttgacgggcaagatgcgattaaaggctcagcacgctccatcccaggcattcatatt
cgtgatgccatagagcgcatcgcagagagccatcctgagctgattacccactttggtggg
catgccatggcagcggggcttacgcttaaaagaaaggattttaaggcgtttgctgaggca
tttgagctgcaaatgcaaagtgtggaggcttcggtatttgaggagcagcagttcaccgat
ggtcaactgctggcagaagactttagcttacagttcgttgaggcgttgacacaaaaccat
atctggggtcatggttttgtgccaccgcagttcgatggtgtgtttgacgtggtgcaggcg
cgaattttaaaagacaagcatttaaagctatcgctaaaataccctggggtgatgtatcct
attgatgccatctggtttaactatgaccccaaaaagtgggattaccgtgcccaacaagta
catgtattgtttgagcttagtattaatgagtggcagggtaatcaaaatattcagctgatg
gtaaaggacgtagcggtcacccaaattagcccctaa
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