Psychrobacter sp. PRwf-1: PsycPRwf_1212
Help
Entry
PsycPRwf_1212 CDS
T00541
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PsycPRwf_1212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prw03400
]
PsycPRwf_1212
Enzymes [BR:
prw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PsycPRwf_1212
DNA repair and recombination proteins [BR:
prw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PsycPRwf_1212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABQ94161
UniProt:
A5WES0
LinkDB
All DBs
Position
complement(1484140..1488630)
Genome browser
AA seq
1496 aa
AA seq
DB search
MTDITDNTTLDTQAQGLADDLASYAHADSDVPNESHQEHNKEVIPAVDVALSGQHLIEAS
AGTGKTWTLTGIVLRLLIEARRAPEQIIATTFTRAAAAEMRQRIHDRLVDFYQLLQWVNN
LSADLANKEHLYPDILQVTPEDSRDQRQADKQADKAANASLADDELNQDLAHDKQREAAH
KATAKKIRAKWLVEQAKNARLDDIMQDPINLHLVGYLLDHIHSYPMTDAIRRTALVLTTL
DKLFVGTLDSLAQKWLAEYSSETGHQQGMAIIEDSQIEQVTDSIIHDELRQFQSRLYYEQ
PKLYGLMEQQGKLTDVSDHKSYVSRSLNFISAPIDEVALNEAFDFADLEQLLEDFAKLDL
TDIEPYLNPDYRKSQGFNGRSSLQTRFEFITEIHEVIADKGVSFESYLSEDAKKLLGSLR
DAQFPNDDGKIKNFNKNKEKQHQALFELETICQLMSIMDKMDRLNQHILLLLATLNRHIV
LAVRDRLPVILEERGETTFSLQMVRLNQALTGRQGEKLARYIRHHYPVALIDESQDINGE
QAIMIESIYLPSHKRQHSGSQTGDEGKQSTNTKSNQEFLLLVGDPKQAIYGFRGGDVANY
NYMKAQFDKSSLWTLDINRRSNKGVIDALNCWFGMPTPTTSENKFAELGSHIYYQHITAA
KLEKQLSWFNDLDSYQAATSSSAATTEVDLVTDVLSAKPVSVLHLPYDKELEYDEHEVTA
RHIAALLNSGQTLKGKPIQPSDIGVLARAKKDLKRVEDELVKLNVATLTTSDVSIFETIM
AEDVAALLSAMLYPYRHDMINRVLTSHLYGLSIKEVKAMMTDHESGVAQSDEAAVKVAAH
TNSATNGSIQGDTGKKSYQDVISYLKEAAQRWQNFGILSAMHYLLDKSPVQPQGVWQALA
AHPEGDRHIMDLRHVMDILAQYGMGMGEHELLAWFRQNIDAAPNSDWAKQYPLPTESGVQ
LMTIHKSKGLEFPIVYALGMGSASRKSGNKEDYGLYLYNAQQAPNALVQRVQGSSGNQRR
FSAVKDSATTPGYYTDIETQEDFEEFRRLGYVAFTRASELLYVVLRDPKDKTGFDLKPVF
YWFDSSEPKFELPDRLKGSIGMVRGQKVHEFYQDNDTKAKTHHLTDSTQATLTQPRLEPI
KYDKFSDVMRDNYFYGWAKTSFTALARQLDESTQAMAVVDERIDDATYIDISEADGALNA
QIQEHGLAIKAVDDIRFSFVKGANAGTFLHEIFEKIHFTNPEQWPAVIDRAVSGYQLPLA
YASVAHQKRILEASRQGANNKTYHIDERGLQHQALMSWINEVLHTPLLASGQRLVDISPK
QRFAEMGFNMGLSETFKAQQINTLFERYLPHEPDKHIRLTAQSSSQLYRYLRGEIDLVYE
HAGKFYVVDYKSNFLGNSLSNYDETTLKLAMSKAGYWLQAAIYQVALHRFLSMRIADYTG
NEAKYLGPVEYVFLRGTYAPAMTERAEDYTPRYGLVTWDIPIEFVKALDKLFGKPQ
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgacagacatcactgataacacgaccttagatacccaagcacaagggctagcggatgat
ttagcctcgtatgcgcatgctgacagcgatgtgcccaatgagtcgcatcaggagcataac
aaggaggtgataccggctgttgatgtggcgttaagcggtcaacatcttatcgaggcgtca
gcgggcacaggtaagacttggaccttaactggtattgtactgcggctacttatcgaggcg
cggcgtgcgcctgagcaaattatagcgaccacttttacccgagcggcagcggctgagatg
cgtcagcgtattcatgatcgcttggtggatttttatcaactgctgcaatgggtcaataac
ctaagtgcagatttggccaataaagagcacttatatccagatatcctgcaggtcacccct
gaggacagtagggatcaacgacaggcagataaacaggcagacaaagcggctaatgctagt
cttgctgacgatgagcttaaccaagacttagcgcatgacaaacagcgagaagcagcgcac
aaagccactgccaaaaagattcgtgccaagtggttggtagagcaggcaaaaaatgcccgt
ttagatgacatcatgcaagacccgattaacctgcacttggtgggttacttgctggatcat
atacacagttatccgatgacagatgccattcgccgcaccgcactggtattaaccacactt
gataaactgtttgtgggcacgcttgatagtctggcacaaaaatggctggcagaatatagc
agtgagacaggtcatcagcaaggtatggccattattgaagacagtcagattgagcaggtg
accgacagtattattcatgatgagctgcgacagtttcaaagccgtttgtattacgagcag
cctaagctatatggactcatggagcagcaaggcaagctgaccgatgtcagtgatcataag
tcctatgtgagccgctcgcttaactttatttctgcacctattgatgaggtggcgctaaat
gaggcttttgacttcgctgatttggagcagctgctagaggattttgctaagcttgatttg
acagatattgagccgtacttaaatcctgattatcgaaagtcacaaggatttaatggtcga
tctagtctacagactcggtttgaatttattactgagattcatgaggtaatcgctgacaaa
ggcgtgagctttgagagttacctaagtgaagatgctaaaaaactattggggtcattaaga
gatgctcagttccctaatgatgacggaaaaataaagaactttaataagaataaagaaaaa
cagcatcaagccttgttcgagctagaaaccatctgccagttaatgtccattatggataag
atggatcgtttaaatcagcatattttgctattgttggccacgcttaatcgtcatattgta
ctggctgtccgtgacagattaccggtcattttagaagagcgtggcgagacgacgtttagc
ctgcaaatggtacgtctgaatcaggcattgaccggccgtcagggagagaagctggcacgt
tatatccgccaccattatccggttgcgcttattgatgaatcacaagacatcaatggcgag
caagccattatgattgaaagtatttatctgccgagccataaacgtcagcactcaggcagt
cagacaggcgatgagggtaagcagtcaactaataccaagtctaatcaagagtttttgttg
ttggttggcgacccaaagcaagccatttatggcttccgcggcggcgatgttgccaactat
aattatatgaaagcccagtttgataaaagtagtctatggacactagatatcaaccgccgt
tctaacaaaggggttattgacgccttaaactgctggtttggtatgccgacgcccacgaca
agcgagaacaaatttgctgagctcggcagtcacatttattatcagcacattactgcagcc
aagcttgagaagcagttgtcctggtttaatgacttagacagttatcaagccgctacatca
agcagcgctgcaacaacagaagttgatttagttactgacgtgctatctgctaagcctgtc
agcgtcttgcatctgccttatgacaaagagcttgaatacgatgaacatgaagtgacagca
cgccatattgccgctttattaaacagcggccagaccttaaaaggcaaacctattcagcct
agtgacattggggtgctggcacgtgccaaaaaagacttaaagcgggtagaggatgagctg
gttaagttaaatgtagcgactttgaccaccagtgacgtgagtatctttgagaccatcatg
gccgaagacgtggctgctttactgagcgccatgctctatccataccgtcacgacatgatt
aatcgcgtactgaccagccatctgtatgggctgagcatcaaagaggtcaaagcgatgatg
accgaccatgaatcaggtgtcgctcaaagcgatgaggcagccgtaaaagtagctgctcat
accaatagtgccactaacggtagtatccaaggggatactggcaaaaaaagctatcaagat
gtcatcagctatcttaaagaagcggctcagcgttggcagaattttggcatcttatcagcg
atgcattatttgctagataaaagcccggtacagccacaaggcgtatggcaggctttagca
gcgcatcctgaaggcgatcgacatatcatggatttgcgccatgtgatggatatcttggcg
cagtatggtatgggtatgggtgaacatgagctgctggcgtggtttagacaaaacatagac
gctgcacccaacagtgactgggccaagcagtacccactgccgacagaatctggcgtacag
ctaatgaccattcacaaatctaaagggcttgagttcccaattgtctatgcgcttggcatg
ggcagtgccagccgcaagtcgggcaataaagaagactatgggctgtatttgtataatgct
cagcaagcgcctaatgccttggtacagagggtacagggctcttctggtaatcagcgccgt
ttttcagcggtaaaagactcagcgaccacaccaggctattatacagatatcgagacccaa
gaagattttgaggagtttcgtcgcctcgggtatgtggcctttacccgtgccagtgagctg
ctttatgtggtgctgcgagacccaaaagataagactgggtttgatctaaagccggtgttt
tattggtttgattcatcagagccgaagtttgagctgcctgatagactcaaaggatcaata
ggcatggtacgcggacaaaaagtgcatgagttttatcaagacaatgatactaaggctaaa
actcatcacttaacggacagtactcaggctacccttactcagccgcgtttagagccgatc
aaatacgataaattttctgatgtgatgcgagacaattacttttatggctgggccaagacc
agcttcaccgcgcttgcccgtcaattagatgaatccacacaagcgatggctgtggtcgat
gagcgtatcgatgatgccacatatattgatattagcgaggcagatggcgctttaaatgcc
cagatacaggagcacggactagccattaaagctgtagatgacattcgctttagctttgtt
aaaggcgccaatgcgggtacgtttttgcatgaaatctttgagaagatacattttaccaat
cctgagcaatggcctgcggtgatagacagagcggtcagtggctatcagctacccctggcc
tacgccagtgtggcgcatcaaaagcgcattttagaagccagcagacaaggggcgaataac
aagacttatcatatcgatgagcgggggcttcagcatcaggcattaatgagctggattaat
gaggttttgcacacgccattattggcttcaggtcagaggttggtggacatctcacccaag
cagcgctttgcagagatgggctttaatatgggattatctgaaacctttaaggcgcagcaa
attaacaccttatttgagcgttatttgccccatgagcctgacaaacacatccgcttaaca
gctcaaagtagcagccagttatatcgttatctgcgcggtgagattgacttggtttatgag
catgcaggcaaattttatgtggttgattataaaagtaactttttaggaaatagcctaagc
aattacgatgaaaccaccctaaaattagcgatgagtaaagcaggctattggctacaagcc
gcgatttatcaagtggcgctgcatcgctttttatcgatgcgtatcgccgattatacaggt
aatgaggctaagtatttgggccctgttgaatatgtatttttgcggggaacttatgcgcca
gcaatgacagagcgcgctgaggactacaccccccgttatggactggttacttgggatatt
cccattgagtttgtaaaagcgttagataagctatttggtaagcctcagtag
DBGET
integrated database retrieval system
