Psychrobacter sp. PRwf-1: PsycPRwf_1232
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Entry
PsycPRwf_1232 CDS
T00541
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03030
DNA replication
prw03430
Mismatch repair
prw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PsycPRwf_1232
03430 Mismatch repair
PsycPRwf_1232
03440 Homologous recombination
PsycPRwf_1232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prw03032
]
PsycPRwf_1232
03400 DNA repair and recombination proteins [BR:
prw03400
]
PsycPRwf_1232
Enzymes [BR:
prw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PsycPRwf_1232
DNA replication proteins [BR:
prw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PsycPRwf_1232
DNA repair and recombination proteins [BR:
prw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PsycPRwf_1232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABQ94180
UniProt:
A5WET9
LinkDB
All DBs
Position
1514141..1517752
Genome browser
AA seq
1203 aa
AA seq
DB search
MAFVHLGIHSEFSITDSIIRIKPMVKAAAADGQMALALTDLSNLYATVKFYRACLDAAIK
PIIGAEIILDDEHTRLTLLAMNNEGYQSITRIVSLGFTDGRMNPDNRGTPIVNKAHLLDN
SAGVIVLFTEKSDVGQALLGANPERGHQLISEYQAVFGDRLYFAIKRTKRALEDTFIEQA
ILAGQRHGIATVAHNDVRFLEEEDFDAHEARVCIASSHVLADPNRPHDYSSEQYLKTQAQ
MTELFSDIPQVVQNTVILAQRCNVTLTLGINVLPEFPVPEGETIESFFRAESQRGLEARL
DKLYPVSERDETWPEIRRPYDERLEHELNIILEMGFPGYFLIVMDFIRWAKANGVPVGPG
RGSGAGSLVAYALNITDLDPLHYDLLFERFLNPERVSMPDFDIDFCIEGRDRVIEYVASQ
YGREAVSQIITFGTMAAKAVVRDVARVQSKSYGLADKISKLIPKTPGISLKDALLEEPQL
KDLLSNPDNMDYEDANEIWEMAIKLEGITRNVGKHAGGVLIAPNKITDFSAIYCDEEGHR
VSQFDKDDVESVGLVKFDFLGLRNLTVINAAVKNINERRARENKPALELEDLPLDDTNAY
KLLQDAKTTAVFQLESSGMKKYLAKLQPTNIEDVIAMCALYRPGPLDAGMVEMYIDRKHG
REEVVYDHPNLEPILENTNGVIVYQEQVMQISQVMAGYSLGGADMLRRAMGKKKPEEMAK
QRDIFVTGATAQGIDPVISGGVFDLMEKFAGYGFNKSHSAAYGVLAYQTAYLKYYYPAEF
MAAVLTSDMNNTDNVVFFINDCRENFDLSVDNPSVNRSEWHFVADTPTNIIYGLGAIKGV
GEGAVDSIVQARRQGGKFTDLYDFCRRVDIKKVNKRTLEALIKSGCFDDFAITQRPDLAA
DERHQIRGALMAQLPSAVQAAEQERQNNEMGMMDLFSEVDNATTAPPLPTDSGLIWGDKH
RLKAEKDTLGLYLTGHPLDQYRKEVAVYTSNARLDSLADTGYNGSTFFAGLIMDIANFGN
RCVITLDDGTARLEVSCYAERFNRIKDKLKVDEVIVIKGGIRDRDGRLFARLDNAYTLLE
CRQRWVKKISIKIHSQNTLLLDSLQPLLKPAQSHLIPNHQSPAFDEDSDDGNSMEAYYNG
NSDMTAAPVAQNDGCIPIALNIYTDFAIANVSLNDNWRLYPTDDNLIQLGTLVPQDNLYF
HYQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgtacatcttggtattcacagcgaattttctattacggactctattatccgt
atcaaacctatggtcaaagcggccgctgctgatggacagatggcactggcattgacagat
ttatcgaatttgtatgccactgttaaattctatcgtgcctgcctagatgcggcgataaag
cccattattggtgctgagattattcttgatgatgaacatactcgtttaaccttgcttgcc
atgaataacgagggttatcaaagcattacccgtattgtctcgctaggcttcactgatggc
cgcatgaatcctgataaccgaggaacacctattgtcaataaagcgcatttgctagataac
agcgctggggttattgtactattcaccgaaaaatctgatgtgggccaagctttattaggc
gcaaacccagagcgcggacatcaattaattagcgagtatcaagcagtattcggtgatcgc
ctgtattttgcgataaagcgcaccaaacgggctttggaagatacttttattgaacaggcc
atattggcaggtcagcgtcatggtattgccacagtggcccataatgacgtgcgctttttg
gaagaagaggactttgatgctcacgaagctcgagtgtgtattgcctcctcccatgtattg
gctgatcccaataggccacacgactactcaagtgaacagtatctaaagactcaagcccag
atgactgagctattttccgatatccctcaggtggttcaaaacacggtcattctagcgcag
cgctgtaacgttactttgacactgggcataaacgtattgcctgaatttccagtaccagaa
ggtgagaccattgagtctttcttcagagctgagtcgcagcgcgggctggaggcacgtttg
gataagttatatccagtaagcgagcgtgatgagacgtggcctgagattcgcagaccctat
gatgagcgcttggagcatgagcttaatattatcttggagatgggatttccgggctacttc
ttaatcgttatggactttattcgctgggccaaggccaatggcgtgcctgtcggtccaggg
cgtggttcgggcgccggctcgttagtggcctacgccttgaacatcaccgaccttgatccg
ctgcattatgatctgctgtttgagcgcttcttaaaccccgagcgtgtgtccatgcctgac
tttgatatcgacttttgtattgaagggcgtgaccgcgtcattgaatacgtggccagtcaa
tatggccgtgaggcggtgtcgcagattatcacctttggtaccatggcggctaaagctgtg
gtgcgagacgtggctcgtgtccaaagtaaatcttatggcttggctgataaaatctccaag
cttattccaaagacgcccggtatctctttaaaagacgccctactcgaggagcctcagctt
aaggatttgctgtctaatccggacaacatggactatgaagatgccaatgaaatctgggag
atggccattaagcttgagggcatcactcgtaacgtcggtaagcatgccggtggggtacta
atcgccccaaacaaaatcaccgactttagtgcgatttattgtgatgaagaaggtcaccgg
gttagccaattcgacaaagatgacgtagagtctgtcggcctagttaagttcgacttctta
ggtctacgcaacctaacggttatcaatgccgctgtcaaaaacatcaacgagcgccgtgct
cgtgagaataagcccgctttagagcttgaagacttaccgcttgatgatacaaatgcctat
aagctgctacaagacgccaaaaccacagcggtgttccagctagagagctcaggtatgaaa
aaatacctggccaagctgcagccgaccaacatcgaagacgttatcgccatgtgtgcgttg
tatcgccccggcccattagacgctggcatggtagagatgtatattgaccgcaaacatggg
cgtgaagaggtggtgtatgatcacccaaaccttgagccgattttagaaaacaccaatggg
gttattgtctaccaagagcaggtaatgcaaatctcacaggtcatggctggctatagctta
ggcggcgctgacatgctgcgccgtgccatgggtaaaaagaaacctgaagagatggccaaa
cagcgtgacatttttgtgaccggtgccacagcacaaggtattgaccctgtcatctctggc
ggtgtgtttgatttgatggaaaaattcgccggttacggctttaacaagtcgcactcagcc
gcttacggggtacttgcctatcaaacggcttatctcaaatattactacccagctgagttt
atggcagcagtccttacctcagatatgaacaacaccgataacgtggtgttcttcattaac
gattgccgtgaaaacttcgatcttagcgtcgataacccctcagtaaatcgaagtgaatgg
cactttgtggccgatactcccaccaacatcatctatggtttaggtgccattaaaggcgtc
ggtgaaggcgcggtagattctatcgtgcaagcacgtcgccaagggggtaagtttacagat
ctttatgatttttgccgccgagtagatatcaaaaaggtaaacaagcgcaccttagaggcg
ttaattaaatctggctgctttgatgactttgccattacccagcgcccagatttagcagca
gatgagcgccatcagattcgcggtgcgttaatggcacagctgccaagtgcagtacaagcg
gcggaacaagagcgtcaaaataacgaaatgggcatgatggacttattcagtgaagtcgat
aatgccaccaccgcaccgccactgcctacagatagcggtctgatttggggagacaagcac
cgtctcaaagctgaaaaagacaccctagggctttatttaaccggtcatcccctagatcaa
taccgcaaagaggtggctgtttatacctcaaatgcccgtttagatagcttggcagatact
ggctataacggcagtactttttttgccggtttgattatggacatcgcaaactttggtaac
cgctgcgtcattacacttgatgatggcacagcccgtcttgaggttagctgctatgctgag
cgttttaaccgcattaaagacaagctcaaggtcgatgaggtaattgttatcaaaggcggt
attcgagaccgtgatggccggttattcgcccgtttagacaatgcttataccctgcttgaa
tgccgtcaacgttgggtaaaaaagataagtatcaagattcacagccaaaacaccttgttg
cttgactcattacagcccttactaaagcctgctcagagtcatctcattccaaatcatcaa
agccccgccttcgatgaagacagtgatgacggcaattcaatggaagcttactataacggt
aactcggatatgacagcggctccggtagcacaaaacgatggctgtattcctatcgctcta
aacatctataccgactttgccattgccaatgtcagtttaaatgacaactggcgtctgtac
cccacagatgacaatttaatacagctgggcaccttagtaccccaggacaacttgtatttc
cattaccagtag
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