Psychrobacter sp. PRwf-1: PsycPRwf_1727
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Entry
PsycPRwf_1727 CDS
T00541
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
prw
Psychrobacter sp. PRwf-1
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prw03016
]
PsycPRwf_1727
Enzymes [BR:
prw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PsycPRwf_1727
Transfer RNA biogenesis [BR:
prw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PsycPRwf_1727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DNA_pol_A_exoN
PCDO_beta_N
Cep192_D5
DUF6014
Motif
Other DBs
NCBI-ProteinID:
ABQ94667
UniProt:
A5WG76
LinkDB
All DBs
Position
complement(2136460..2137755)
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AA seq
431 aa
AA seq
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MTQVASETTAAKAQSTDKKIASIYDSSKLLDVEAIARERQASADLPVHWVADFDALEACL
DDLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAPKLDLTEFWVVLEEMPLMI
WHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELDVHVEKAESQS
DWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQLYAKELYESANIE
DDATYLAMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLKKQAVRDLVVEMPTSIK
QLTQKTTMHRSIVRLYGDELIQVINQAKALSPEEQPPRIFPPYRSKDKSVSKAVDQVIKQ
YEEQTGVPANVLMRKKWLSSLYEIVAYDLPLEQLPEGLKGWRNEWVMSTLIPLITSHKEA
LKAGMSMQEDD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggtagcatccgagacaaccgcagcaaaagcgcaatctacagacaaaaaaatt
gcctctatttatgacagcagcaagctactagatgttgaggctattgcacgtgagcgacaa
gcgtcagcagatttacctgtgcactgggtggcagattttgatgccctagaggcctgttta
gatgatttagagacctgcgatcgggtggcactagataccgaattcattaagcgcaatact
tactttcctattctagcgctggtgcagattaataccggtaaagccatctatttgattgat
gcaccgaagcttgatttgacggagttttgggtggtattagaagagatgccattgatgatt
tggcatgcttgcggtgaggatctgggtattttttatctgctatcagaaagccctgcgctc
accaatgtgtttgatactcaaattgctttgtcttatctaaccggacagctacagatgggg
tatcagcaagcactgagccaagagcttgatgtgcatgtcgaaaaagcagagagccaatca
gattggctggcacgtccgttgagccatgagcaagaaaattatgccattgatgatgtgcgt
tatttgctcaatttatacgatatattgcagcagcaactgagcaagcagggcttaactgat
aaagtggttgaggactgtcagttgtatgccaaagagctgtatgaatcggccaatatcgaa
gatgacgccacttatctggctatggcagattttcgctataccccagagcagttggcggta
ttacaagcggtatctagctggcgcgaagcattggctcgcgcgaccaatcagcccaagact
tttgtgctaaaaaaacaagccgtacgtgatttggtggtagagatgccaaccagtattaag
cagctgactcaaaagaccaccatgcaccgcagtatcgtacgcttatatggtgatgagctg
atccaagtgattaatcaggccaaggcgctaagcccagaggagcagccaccacggattttt
ccaccctaccgctctaaagataagagtgtctcaaaagcggtcgatcaggtgattaagcaa
tatgaggaacagactggcgtgcctgccaatgtgctgatgcgcaaaaaatggctgtcaagc
ttatatgaaattgtggcctatgacttaccacttgagcagctgcctgagggtctaaaaggt
tggcgcaatgaatgggtgatgagcaccttaattccacttatcacgtctcacaaagaagcg
ctaaaagcgggtatgagcatgcaagaggatgactag
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