Psychrobacter sp. PRwf-1: PsycPRwf_2237
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Entry
PsycPRwf_2237 CDS
T00541
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PsycPRwf_2237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prw03019
]
PsycPRwf_2237
03016 Transfer RNA biogenesis [BR:
prw03016
]
PsycPRwf_2237
Enzymes [BR:
prw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PsycPRwf_2237
Messenger RNA biogenesis [BR:
prw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PsycPRwf_2237
Transfer RNA biogenesis [BR:
prw03016
]
Prokaryotic type
tRNA degradation factors
PsycPRwf_2237
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_Dis3
HTH_5
HTH_24
Motif
Other DBs
NCBI-ProteinID:
ABQ95177
UniProt:
A5WHN6
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All DBs
Position
2778598..2780910
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AA seq
770 aa
AA seq
DB search
MTWNDPNAQQEAQNYENPIPSRLLILQTLADQGELTHKQLAQSFGIDNEDQFDALGNRLK
AMARDGQVNREGRPYKYRAVTKQDVVTGTVSAHAKGFGFLVLDDMPDLFLHEKQMRWVFN
GDTVNAIGTTTDNRGRTEGRIVEVIDRQQTHFIGTLEKDDEGYTVSLASPNNHQPITVTE
DNVKAVNAKPGVAVKVDIIDWPTQHEFATGKIVNVMDDDNDREVIIETTLLNYDIPSEFG
AGVIKQANSYKEPNKKDLQGRIDIRDLPMVTIDGEDSRDFDDAVYAEKRPGGNYRVVVAI
ADVSHYVTPNSALDHEAFERGTSVYFPHHVVPMLPEVLSNGLCSLNPGVDRLCMVADIKL
SRAGNITGYEFYPSVMHSQARLTYNQVNDYFDGNMENVPDSLTGNKDVKKSVDTMHQLYK
VLVKKREERNAMEFETPETYIKFNEEGGIDAIVPRTRGDSHKLIEELMLLANTCAANFAL
KNELPVLYRNHDKPDSEKSRTVHEYAKNFGISFPEENPTQADYKRIIEATKDRPDAVSIH
SMLLRSMMQANYSPDNIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKAKVTGKKQPQMDF
TLEEAGQQTSDTERRAEKASRFVESWLKCHYMKDHVGEEFDGVVTTVTSFGLFINLTELF
IDGLVHISNVGKDYFVYDEKQQQLIGQDKGMVYGLGDLVRIKVAAVNMDLLQIDFELIAK
LKASAMNQTKKDGKANAKQKPSAQNSSAKHGEDKKPSRRRSSRGRGKPKS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgacctggaacgatcctaacgcacaacaagaagctcaaaactacgaaaatcctatccca
agccgcttgcttattttgcaaaccttggccgatcaaggagagcttactcacaaacaattg
gcccaatcttttgggattgacaatgaagatcaatttgacgctttaggcaaccgcctaaag
gccatggcccgtgatggccaagtcaaccgtgaaggtagaccttataaataccgcgctgtg
acaaagcaagatgtggtcacaggtaccgtatcagcgcatgccaaaggcttcggctttttg
gtacttgatgacatgccagatttgtttttgcatgagaaacagatgcgctgggtattcaac
ggtgataccgttaatgctatcggcaccaccaccgataatcgtggccgcactgaagggcgt
attgttgaggttatcgatcgccaacagacccactttatcggtaccttagaaaaagatgat
gaaggctataccgtatctttggcaagccccaacaatcatcaaccgattaccgttaccgaa
gacaatgtcaaggcagtgaatgccaagccaggtgttgcggtaaaagtcgacattatcgat
tggccgactcaacacgaatttgccacgggtaaaatcgttaacgtgatggatgatgataat
gaccgtgaggtaattattgaaaccactttgcttaactatgatatcccaagcgaatttggt
gcaggtgttatcaagcaagccaatagttataaagagcctaacaagaaagatttgcaaggc
cgcattgatatccgcgacttgccaatggtcaccattgatggtgaagattcacgcgacttt
gacgatgcggtatatgcggagaagcgtccaggcggtaactaccgtgtggtagtagccatc
gccgatgtgagccattatgtcacccccaattcagcattagaccatgaagccttcgagcgg
ggtacttccgtatatttcccacatcatgtggtaccaatgctaccagaagtattgtctaat
ggcctgtgttcattgaacccaggcgttgaccgtctatgcatggtcgccgatattaagtta
tcacgcgccggcaatatcaccggttatgagttctacccttctgtgatgcactctcaagcc
cgtttgacctataaccaagtcaatgattactttgacggtaatatggaaaatgttccagac
tctttaacaggcaataaagacgttaaaaaatctgtcgataccatgcatcagctatacaaa
gtattggttaaaaagcgcgaagagcgcaatgcgatggagtttgagacacctgagacttat
attaagtttaatgaagaaggcggcattgatgccatcgtgccacgtacccgtggtgactcg
cacaagctgattgaagagcttatgttattggccaacacctgtgctgctaactttgccctt
aaaaatgagctgcccgtgttataccgtaatcacgataagccagattctgagaaatctcgt
acagtgcatgaatacgccaaaaacttcggtatcagtttcccagaggaaaaccccactcag
gcggactacaagcggattatcgaagccaccaaagatcgtccagatgcggtgagtattcac
agcatgctgctgcgctctatgatgcaggccaactactcaccggacaacatcggtcacttc
ggtcttgcttatgatgaatactcacactttacctcaccgattcgccgttatcctgactta
atgctgcaccgtgctattaaggccaaagtcactggtaaaaaacaaccgcaaatggacttt
acgctagaagaagccggtcagcagacttcagatacggagcgccgtgctgaaaaagcctcg
cgctttgttgagagctggttaaaatgccactacatgaaagatcatgtgggtgaagagttt
gatggtgtggtcaccacagtcaccagcttcggtctatttatcaatttgactgaattgttt
attgatggcttagtgcacatctcaaacgtgggtaaagactacttcgtttatgatgaaaag
cagcagcaacttatcggccaagacaaaggtatggtctatggtctaggcgacttagtacgt
attaaagtggctgcggtcaacatggacttattgcaaattgactttgagcttattgccaag
cttaaagccagcgccatgaaccaaaccaaaaaagacggtaaagccaacgctaaacaaaag
ccatcggctcaaaacagcagcgctaaacatggggaagacaaaaaaccgtctcgtcgccgt
agtagccgaggccgtggtaaacctaagtcttag
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