Psychrobacter sp. PRwf-1: PsycPRwf_2310
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Entry
PsycPRwf_2310 CDS
T00541
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
prw
Psychrobacter sp. PRwf-1
Pathway
prw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PsycPRwf_2310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prw03021
]
PsycPRwf_2310
03019 Messenger RNA biogenesis [BR:
prw03019
]
PsycPRwf_2310
Transcription machinery [BR:
prw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PsycPRwf_2310
Messenger RNA biogenesis [BR:
prw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PsycPRwf_2310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
S1CSD-TOTE-2
TFIID-18kDa
AAA
Motif
Other DBs
NCBI-ProteinID:
ABQ95250
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All DBs
Position
2877323..2878621
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AA seq
432 aa
AA seq
DB search
MTQQPSNETSMNLTELKKNSVAELLNIAKEMGLDNLARSRKQDIIFAILKKHAKNGEAIY
GDGVLEVLPDGFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERY
FALLKVGEINFDTPDRSRHKLIFENLTPLFPTEQLKLEMGNGTTEDLTGRVIDLIAPIGK
GQRSIIVAPPKAGKTVLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMQRTVRGEVVAS
TFDEPPQRHVQVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVVPSSGKVLTGGVD
ANALAQPKRFFGAARNIEEGGSLTIISTALIDTGSKMDSVIFEEFKGTGNQEITLERDLA
EKRVFPAINIKKSGTRREERLLDEDTLRKVWILRKLLQPMDGVQATEFLLDRLKEAKTND
DFFDQMKRKSQN
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactcaacaaccatcgaacgaaacctctatgaacctgactgaactaaaaaagaactcc
gttgctgaattgctaaatatagcaaaagaaatggggctcgataatttggcacgtagccgc
aaacaagacatcatctttgctattttaaaaaagcacgccaaaaatggtgaagccatttac
ggcgacggggtacttgaagtgcttcctgatggatttggcttcctaagatcttcagaaggc
tcttatttggctggacctgatgacatctatgtaagcccaagccaaatccgccgctttagc
ctaaaaacaggcgactctattgccggcaccatccgtccaccaaaagattcagaacgttac
tttgccttacttaaagtgggtgaaatcaacttcgataccccagatcgctcacgtcacaaa
ttaatcttcgagaacttaaccccactattccccaccgagcaattaaagcttgagatgggc
aatggtacaaccgaagacttaaccggacgtgtcattgacttaatcgcccctattggtaaa
ggccagcgctccattatcgtggcgccgcccaaagccggtaaaaccgttctactacaaacc
atcgctcaatctattacccgcaataaccctgaatgctatctgattgtactacttatcgat
gagcgcccagaggaagtgaccgaaatgcagcgtactgtgcgcggtgaagtggttgcatca
acctttgatgaaccgccacagcgtcacgttcaagtggctgaaatggtcatcgaaaaagcc
aagcgcttggtagaacataagcaagatgtggtgattttattagattcaattacccgattg
gctcgtgcctataacactgtggtgccctcatcaggtaaagtgttgactggtggtgtggat
gccaatgctctagcccagcccaagcgcttctttggtgcggcacgtaatatcgaggaaggg
ggcagcttaaccatcatttcaactgcgctgattgatacgggcagtaaaatggacagcgtt
atctttgaagaattcaaaggtactggtaaccaagagattacccttgagcgtgacttagcc
gaaaaacgagtattcccagccattaatatcaaaaaatcaggcacccgccgtgaggagcgc
ttgcttgacgaagatacgctgcgtaaagtttggattttgcgtaaactgctacagcctatg
gatggcgtacaagccactgagttcttattagatcgcttaaaagaagccaagaccaatgac
gactttttcgatcaaatgaagcgcaaatcacaaaactaa
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