Pseudomonas rhodesiae: HRH33_09515
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Entry
HRH33_09515 CDS
T07097
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prx
Pseudomonas rhodesiae
Pathway
prx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRH33_09515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prx03019
]
HRH33_09515
03009 Ribosome biogenesis [BR:
prx03009
]
HRH33_09515
Enzymes [BR:
prx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRH33_09515
Messenger RNA biogenesis [BR:
prx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRH33_09515
Ribosome biogenesis [BR:
prx03009
]
Prokaryotic type
rRNA helicases
HRH33_09515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QKJ72806
LinkDB
All DBs
Position
2084700..2086373
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagcc
gtcgcagcgaccggctacgaagaaccttcggctattcagcagcaatcgatcccaatcatc
atggccggtaaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttt
gccctgcctatcctgcattgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgcctggtgtaaccgttgtggccgtttacggcggcgcgccgatgggcccacaactgaaa
gccatccgtaatggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacttggttctcgacgaagctgacgaa
atgttgaagctgggcttcatggacgatctggaagtcatcttcaaggctctgccagccacc
cgtcagaccgtactgttctcggccacgctgcctcagtcgatccgtgccattgccgaacgc
cacctgcgcgatccggagcacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagtgccctggaagccaaaggctacaaggccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgcggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgccttgctgctggtgacgccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtgaccggtcagaaggtggccgaagtccgcctgccggatgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctggcacccctggtggctgacgctgaatcg
acccacggcgacttgctggaccgcctgaccgccgatatcggttgcaccccgcgtgctctg
gccgccgcactgctgcgcaaggccaccaacggtcaggccctgaccctggccgccatagag
aaagaacgcccactggttccgaacagcgccccgcgcggtgatcgtccagagcgttccggc
gaccgtccggaccgtggtgatcgtgagcgtcgcgctccggtgccattggccgaaggccgt
gcccgttgccgtaccgcgctgggtgcgcgtgacggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcgcgtgaggctatcggtcgcattcaggtccgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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