Pseudomonas rhodesiae: HRH33_13255
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Entry
HRH33_13255 CDS
T07097
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
prx
Pseudomonas rhodesiae
Pathway
prx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
prx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HRH33_13255 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prx03400
]
HRH33_13255 (ligD)
Enzymes [BR:
prx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HRH33_13255 (ligD)
DNA repair and recombination proteins [BR:
prx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HRH33_13255 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QKJ73506
LinkDB
All DBs
Position
complement(2924422..2926908)
Genome browser
AA seq
828 aa
AA seq
DB search
MAKPLSEYNRKRDFQITAEPSGSAPAGKKAKASALSFVIQKHDARHLHYDFRLELDGVLK
SWAVPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGVWQPHDDPH
QAYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKQQWLLIKEKDAQARPATEFDIVQAQP
DSVLSDASVGQPPPEKPKAKARSKKAASASALPEQFTPQLATLVERAPEGDWQYEIKFDG
YRILARIRDGEVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNSDGLPDFQA
LQNAFDIGRSLDIVYYLFDAPFLNGQDQREAPVEQRRAALKAALRGSRSKLLRFSEAFAA
NHRDIFESVCDLALEGVIGKRVGSPYVSRRSNDWVKLKCRLRQEFVIVGYTRPQGSRSGF
GALLLAVNEDSGLVYAGRVGTGFDQAALKTIYGQLKPLERNTSPLQKPLTSAQARGVHWV
EPTLVGEVQFAEWTREGVVRQAAFVGMRTDKPAEQIVHEVPRKAQFAPPATNPVGVKISH
PDRVIDPQSGTQKQQLAQFYESISPWILPFLQRRPVSLLRAPEGVDGEQFFQKHAEHLAI
PHITQLDPALDPGHARLMEIDSVQALVGAVQMGTIELHTWGSTSDKIETPDLFVLDLDPD
PALPWKTMVEAAQLTLSVLDELGLDAFVKTSGGKGLHLVVPLARRDGWDTVKAFAKALAQ
FMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPISREELK
GLRGAQQWTVANLLQRVQGLKADPWAGYANRQKITRKMWDKLGARPPQ
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaccgttgagtgaatacaaccgcaaacgtgacttccagatcaccgccgaaccg
tcgggcagtgcgccggccggaaaaaaagccaaggcatcggcgctgtcgtttgtgatccag
aagcacgacgcacgccaccttcactatgatttccgcttggagctggacggcgtcctcaag
agctgggcggtgcctaaaggcccgagcctggacccgagccagaagcgcctcgcggtgcac
gttgaagaccacccgctgagctatggcagcttcgaaggcagcatcccggcaggccagtac
ggcgccggggacgtgatcgtgtgggaccgcggcgtctggcaacctcacgatgacccgcat
caggcgtatgccgccggcaaactcaagttcaccctggtcggcgaaaaactcagcggcgat
tggacgctggtgcgtactcgcctcaagggcagcggcgacaagcaacaatggctgctgatc
aaggagaaagacgcccaggcccgccccgccacggagttcgacatcgtgcaggcccagccg
gacagcgtgctcagcgacgcctcagtgggccaaccgccgccagagaaacccaaagccaaa
gctcgtagcaaaaaagcggcctccgccagcgcccttcccgagcagttcaccccgcaattg
gccacgctggtggagcgcgcgcccgaaggcgattggcagtatgaaatcaagttcgatggc
taccgcattctggcgcgtatccgcgacggcgaggtgcgcctgtttacccgcaacggccat
gactggaccgagcgtctgccgcgtcaagccaaggcgctgcaagctcttaagctcaaggac
agctggttagatggcgaggtcgtcagcctcaatagtgacgggctcccggatttccaggct
ttgcagaacgctttcgatatcggccgcagcctcgatatcgtctattacctgttcgacgcg
cccttcctcaatggccaggatcagcgagaagctccagtggaacagcgccgcgcagccctc
aaggccgcgctgcgcggtagccgaagcaagctgctgcgcttctccgaggccttcgctgcc
aaccaccgggatatcttcgaaagtgtttgcgacttggccttggaaggcgtgattggcaaa
cgcgtgggcagcccctatgtatcgcggcgcagcaacgattgggtcaaactcaaatgccgc
ttgcgccaggaattcgtgattgttggctacacccgccctcaaggctcgcgcagcgggttc
ggcgcgttgctgctggcggtcaacgaggatagcgggttggtgtacgccggccgggtgggc
acagggttcgatcaggccgcgttgaagaccatctacgggcagttgaaacctctggagcgc
aacacatcgccgctgcaaaagccgttgaccagcgcccaggcgcgcggcgttcattgggtg
gaaccgacactggtcggtgaagtgcagtttgcagaatggacccgcgaaggcgtggtgcgc
caggccgcttttgtggggatgcgcaccgataagccagccgagcagatcgtgcatgaggtg
ccgcgcaaagcccaattcgcaccacccgcgacgaacccagtcggggtcaaaatcagccac
cccgaccgcgtcatcgacccccagagcggcacgcagaaacaacaactggcgcagttctac
gagagcatcagcccgtggattctgccctttctgcagcgacgcccggtatcactgctcagg
gcacctgagggcgtcgacggcgaacagtttttccagaaacacgctgagcacctggctatc
ccccacattacgcagctggacccggcgctggacccaggtcacgcgcggctgatggaaatc
gacagcgtgcaggcgctggtaggcgccgtgcaaatgggcaccatcgagttgcatacctgg
ggctccacctcggacaaaatcgaaaccccggacttgtttgtgctcgacctcgacccggac
cctgcattgccgtggaaaaccatggtggaagcggctcaactgacgttgtccgtattggat
gagctgggactggatgccttcgttaaaaccagcggtggcaaagggctgcacctggtggtg
ccgttggcgcgacgcgacgggtgggacacggtcaaggcatttgccaaggccctggcgcag
ttcatgactcagcaactgcccgaacgctttaccgccacctccgggccgaaaaaccgggta
ggcaagatctttatcgattacctgcgcaacgcccgaggcgccagcaccgtggcggcctac
tccgtgcgggcacgaccagggctgccggtgtcggtaccgatcagtcgcgaggaattgaaa
ggcttgcgcggcgcgcaacagtggacagtcgccaatctgttgcaacgggtgcaggggttg
aaggctgatccctgggcgggctatgccaaccggcagaaaatcacccgcaagatgtgggac
aagttgggcgcccgcccaccgcagtga
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