Pseudomonas rhodesiae: HRH33_23475
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Entry
HRH33_23475 CDS
T07097
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
prx
Pseudomonas rhodesiae
Brite
KEGG Orthology (KO) [BR:
prx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prx03019
]
HRH33_23475 (hrpB)
Enzymes [BR:
prx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HRH33_23475 (hrpB)
Messenger RNA biogenesis [BR:
prx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HRH33_23475 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
HA2_N
AAA_30
Flavi_DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QKJ75407
LinkDB
All DBs
Position
complement(5190613..5193123)
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AA seq
836 aa
AA seq
DB search
MNSLPIDDVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLNETWLAGQTILMLEPRRL
AARAAAERLASELGEKVGDTVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVQMRWGRPYQPGEFIEPRVVQTILEALHDETGSVLVFLPGQAEIRRVNQQLADAL
GDRPDVLLCPLHGELDLNAQRAAIDAAPPGKRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILA
ADLAGLALQLARWGVTPNQLVWLDAPPSAAYAQAQDLLVRLGALNDDTLTAHGQKMAELP
AHPRIAHLLLRGQDLGLAATACDVAALLGERDIVRGGGADLHSRLALLSGEERVRGSQGG
VQRAKQLARQYRGYLRGKPTQAVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLANG
RAALFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPTLFDTVLAEQVRNVDQLDW
DEREGVLRAERQRKVGELVLSREPLAGLDEAARSQALVNLVRRKGLELLPWTPELRQWQS
RVMLLRQLDAGKTSEWPDLSDSALLAGLEHWLMPYLGKVSRLSHFANLDISSYLHNLLPW
PLPQRLDELAPQHIKVPSGSSVRLDYSEQPPILAVRLQELFGLADTPRIAGGRQVVKLHL
LSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEPTARIKPRKS
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttgcccatcgatgatgttttacccgccctgcgtgacgctttggccaatcgc
catgaagccgtgctcgaagcaccgcccggcgccggtaaaaccacccgcgtgcccttggcc
ttattgaatgaaacgtggctggccgggcagaccatcctgatgctcgaaccgcggcgcttg
gccgcccgcgccgccgccgaacgcctggccagcgaactgggggaaaaggttggcgacacc
gtcggctatcgcatccgcctcgacagcaaggtcggccccaacacgcgtatcgaagtggtc
accgaaggtattctcacgcggcgcttgcaggacgacccggcgctggagggcgtgggcctg
ctgatcttcgatgaattccacgagcgcagtctcgacgccgacctggccttggctctgagc
ctgaacggtcgtgagctgtttcgcgatgagcagccgctgaaaatcctgttgatgtccgcc
accctcgaaggcgagcgcctggccggtttgctggacgacgctccgatcctgcgcagcgaa
gggcgcatgttcccggtgcagatgcgctgggggcggccgtaccagcccggtgaatttatc
gaaccgcgcgtggtgcaaaccatccttgaagccctgcatgacgaaaccggcagcgtgctg
gtgttcttgccgggccaggcggagattcgtcgggtcaaccagcaactcgccgacgccctg
ggtgatcgccccgacgtgttgctgtgcccgctgcacggcgagctggacctcaacgcccag
cgcgccgctatcgacgccgcgccgcccggcaaacgcaaggtggtcctggccaccaacatc
gccgagaccagcctgaccatcaatggcgtgcgtgtagtgattgacgccgggttggcgcga
gtgccgcgtttcgaccccggcagcggcatgacccgcctcgacacccaacgcatctcccgc
gccagtgcgacccagcgcgccggccgggccgggcgcctggaaccgggggtgtgttatcgg
ttgtggtccgaagaccagcatgaaggcctggccgcgtatggcagcgcagaaattctcgcc
gccgacctcgccggtctggccctgcagttggcgcgctggggcgtgacgccgaaccaactg
gtgtggctggatgcgccgccgagcgcggcctatgcccaggcccaggacttgctggtgcgt
ctgggggcattgaatgacgacacgcttaccgcccacggccagaaaatggccgaattgccg
gcccacccgcgcatcgcccatttgctgctgcgcgggcaggacctggggctggcggcgacc
gcgtgtgacgtcgctgcgctgttgggcgagcgcgatatcgtgcgcggtggcggtgcggac
ctgcatagccgtctggcgttgttgtccggcgaggagcgcgtgcgcggcagccaaggtggc
gtgcagcgggccaagcaactggcgcggcaatatcgtgggtatctgcgcggtaagccgacc
caagcggtggccgatcccgatcacccgcgctggctcggcgccttgctggcgctggcttac
ccggatcgcgtggctcagcaacgccgcccaggcggagccgaataccgcttggccaacggt
cgcgcggcgctgtttgcggaggctgatagcctgatgaaacagccgtggttggtaatcgcc
gacctgggtagccgtcagggccagcgcgaagaacgcatctacctggcggcggatttcgat
ccgacgttgttcgacacggtgctcgccgaacaagtccgcaacgtcgatcaactggattgg
gacgaacgcgaaggcgtattgcgcgccgagcgtcagcgcaaagtcggtgagttggtactc
agccgcgaaccgctggccggcctcgacgaagccgcgcgcagccaggccttggtcaacctg
gtgcggcgcaaaggtctggagctattaccctggaccccggaactgcgccaatggcaatcc
cgcgtgatgctgctgcgccagttggacgccggcaaaaccagcgaatggcccgacctcagt
gacagcgcgttgctggccggcctggagcactggctaatgccatacctgggtaaagtctcg
cgcctgagccacttcgccaacctggatatctccagctacctgcacaacctgctgccctgg
ccgctgccccagcgcctcgacgaactggcgccgcagcacatcaaagtcccctcgggctca
tcggtgcgcttggactacagcgagcagccgccgattctggcggtgcgtttgcaggaatta
ttcggcctggccgacaccccgcgcatcgccggcgggcgccaagtggtgaagctgcacctg
ttgtccccggcaagacgcccggtgcaagtgactcaggacctggcgaacttctggcgcagt
acctatgccgaggtgaagaaggatctgaaggggcgttatcccaagcattactggccggat
gatccgctgatagccgagccgaccgcgcggatcaaaccccgaaagtcgtaa
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