Pseudomonas rhodesiae: HRH33_25205
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Entry
HRH33_25205 CDS
T07097
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prx
Pseudomonas rhodesiae
Pathway
prx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRH33_25205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prx03019
]
HRH33_25205
Enzymes [BR:
prx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRH33_25205
Messenger RNA biogenesis [BR:
prx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRH33_25205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QKJ75729
LinkDB
All DBs
Position
5551978..5553849
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AA seq
623 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSASNGRGERPAREQKPREGTPAREQRQPTQPPRAAADRAPDEFLDDDV
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAPRGGQPQGGRQNGPRNSSGGTTGTPPAK
RNGPRNGAPRDGQARREDSRNRRPARDDQSRSSEPAVQNPRGGPAPKIIHKESKVDRFPT
PEQLDQLPGRPRGEKPALLTRNR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactcccgtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcagcccagacaggtactggtaaaaccggcggtttcgccctccctatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactcgccgcccaggtccatgacagcttcaag
ctgtatgcccgcgacctcaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
cctcaggttcaggccatgtcccgtggtgtcgacgtgctggtggcgtgccccggtcgtttg
ctcgacttgtgcggccagggcagcgtcgatttgtcccacgtagaaatcctcgtgctggac
gaagccgaccgtatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctcccaggacatcaccgcc
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtgttccgcctgcccgccagccacaaacgtgcgctgctg
gcccacctgatcaccgctggcgcctgggaacaggtcctggtgttcacccgcaccaagcat
ggcgccaaccgcctggccgagtacttggacaagcacggcctgaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaagccctggccgacttcaaggccggcaccgtg
cgcatcctggtggccaccgatatcgccgcccgcggcctggatatcgaccaattgccacac
gtggtcaacttcgagctgccgaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaagccatctccctggtggcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccgtagaagccgagaagcctgaggcgcgcgagcgtcccgatgtgcgtaac
ccacgcaacccgcgcggtccgaagggcgatggcccgaacggcggtggcggtggcggcggt
cgtcgcgacaagggcaaggacaagggcaaggaaaaatccgccagcaacggacgtggcgaa
cgcccggcccgtgagcagaagccccgcgaaggcaccccggcccgcgaacagcgccagccg
acccaaccgccacgcgccgccgctgaccgcgctccggacgagttcctcgacgacgatgtg
gataacttcggtaaccgcgttgactacgtccctcaggccaagccggcccagggccgtggc
cgtcgcccaggtgctccggcacagggcgcgggcgctccccgcggcggtcagccacagggc
ggccgtcagaatggtccgcgtaacagcagcggcggcaccaccggcaccccgccagccaag
cgcaatggcccacgcaacggtgcaccgcgtgatggccaggcccgtcgcgaagactcgcgt
aatcgccgcccggcccgtgacgaccaatcacgttcgtccgagccagccgtgcaaaacccg
cgtggcggccccgctccgaagattatccacaaggagtcgaaggtcgatcgtttcccgact
ccagagcaattggatcaattgcccggccgtcctcgtggcgagaaaccagcgttgctgacc
cgcaaccgctga
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