Polymorphospora rubra: Prubr_14470
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Entry
Prubr_14470 CDS
T07190
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pry
Polymorphospora rubra
Pathway
pry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Prubr_14470 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pry03400
]
Prubr_14470 (mfd)
Enzymes [BR:
pry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Prubr_14470 (mfd)
DNA repair and recombination proteins [BR:
pry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Prubr_14470 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
GAP1-M
RecG_dom3_C
SHPRH_helical-1st
TraI_hel_assoc_N
Motif
Other DBs
NCBI-ProteinID:
BCJ64426
UniProt:
A0A810MT66
LinkDB
All DBs
Position
complement(1556133..1559759)
Genome browser
AA seq
1208 aa
AA seq
DB search
MMLSGLLTAALGDKGLARTRDLARAGFGQADDLDVTAPPALRPFVVAAMAAAADRGGADR
PVLAVTATSREADDLAAALHSLLPPAQVAVFPSWETLPHERLSPRSDTVGRRLAILRRLT
HPELGDPLKVVVAPVRSLLQPQLKGLGDLEPVELAVKGEAALDDTVRRLTDLAYARVDLV
TKRGEFAVRGGILDVFPPVDEHPSRVEFWGDEIEEIRTFAVADQRTIEAVDRLHAPPCRE
LLLTPKVRARAAELAEQHPELAEILEKLAEGIPVEGMESLAPALLDGTGAMELLLHRMPA
GTHVLLCDPERIRTRAHDLVRTSAEFLEASWAAAAVGGQAPIDLGAAAFRTLAEVRATAA
TLRQPWWSVAPFGLVESEAAAGEPQPWLDEPEEVAVTPDTSDAVTLAAHPTQLYHGDTGR
VVDDLKRWVGDGWAVALVFEGHGPAQRSVEVLRDAGLGAVLTETIEQPPAAGQLVVACGA
LNHGFVDEAARLAVLTGNDVTGGRGASTRDMRKMPSRRRNTIDPLELKAGDHVVHEQHGI
GRYVELVQRTVNGAEREYLVIEYAASKRGQPGDRLFVPTDQLDQLSRYVGGEAPTLHKMG
GSDWQKAKARARKAVREIAAQLIQLYAARKASKGHAYGPDTPWQRELEDAFPYTETPDQL
AAIEEVKRDMEQQAPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHY
NTFAERMSQFPVQIRQLSRFQTPKEAEQTLTAAAEGSADIVIGTHRLLQSATRFKQLGMV
IVDEEQRFGVEHKEHLKTLRTAVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPV
LTFVGAYDDKQVAASIHRELLRDGQVFYLHNRVESIDRAARRLRELVPEARVAVAHGQLG
EDALEKVMVGFWEKEYDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRVGRG
RERAYAYFLYPPEKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGH
IEGVGFDLYVRMVGEAVQQFKGERPEEEVDVKIDLPVDAHLPHDYVGVERLRLEMYRKLA
EARDETRLREVVAEMTDRYGAPPEPVQNLVAVARFRLLARTYGLTDVSLQGRHLRFGPLP
LPDSKQMRLKRYHPDSVYKSATDQVSVPRPTTRRIGGEPLRDQALLDWCAQLLSDVLGDP
AGARPGRA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgatgctctccggtctgctcaccgccgccctcggcgacaaggggctcgcccgtacccgc
gacctggcccgggccggcttcggccaggccgacgacctcgacgtgacggcgccgccggcg
ctgcgtccgttcgtcgtggccgcgatggccgccgcggccgaccggggcggggcggaccgg
ccggtgctcgcggtcaccgcgaccagccgggaggccgacgacctggccgccgcgctgcac
agcctgctgccgccggcccaggtggcggtgttcccgtcgtgggagacgctgccgcacgag
cggctgtcgccgcgctcggacaccgtcggccggcggctggcgatcctgcgccggctcacc
caccccgaactgggcgacccgctgaaggtggtcgtcgcccccgtacggtcgctgctccag
ccgcagctcaagggcctcggcgacctggagccggtggagttggccgtgaagggcgaggcg
gcgctcgacgacaccgtccggcggctgaccgacctggcgtacgcccgggtcgacctggtc
accaagcgcggcgagttcgccgtccggggcggcatcctcgacgtcttcccgccggtcgac
gagcacccgtcacgggtcgagttctggggtgacgagatcgaggagatccgcaccttcgcc
gtcgccgaccagcgcacgatcgaggcggtcgaccggctgcacgccccgccgtgccgggaa
ctgctgctcaccccgaaggtccgggcccgggccgccgagctggccgagcagcacccggag
ctggccgagatcctggagaagctggccgagggcatcccggtggaggggatggagtcgctg
gccccggccctgctcgacggcaccggcgcgatggagttgctgctgcaccggatgccggcc
ggcacccacgtactgctctgcgacccggagcggatccggacccgggcccacgacctggtg
cgtacgtcggcggagttcctggaggcgagctgggccgcggccgccgtcggcggccaggcc
ccgatcgacctcggcgcggccgcgttccggacgctggccgaggtacgcgcgaccgccgcc
acactgcgccagccgtggtggtcggtggcgccgttcggcctggtggagagcgaggcggcg
gccggcgaaccacagccgtggctggacgagccggaggaggtggccgtcaccccggacacc
agtgacgcggttaccctggccgcccacccgacccagctctaccacggcgacaccggccgg
gtcgtcgacgacctgaagcgctgggtcggcgacggctgggcggtcgcgctggtcttcgag
gggcacggtccggcacagcggtcggtcgaggtgctgcgcgacgccgggctcggcgccgtg
ctgaccgagacgatcgagcagccgccggccgccggccagctcgtcgtcgcctgcggcgcg
ctcaaccacggcttcgtcgacgaggcggcccggctcgccgtactcaccggcaacgacgtc
accggcggccggggcgcgtcgacccgcgacatgcgcaagatgccgagccggcgacgcaac
acgatcgacccgctggagctgaaggccggcgaccacgtggtgcacgagcagcacggcatc
ggccggtacgtggaactggtgcagcgcaccgtcaacggcgccgaacgcgaatacctggtt
atcgagtacgccgcctcgaagcgcggtcagccgggtgatcggctttttgtccccaccgac
cagttggaccagttgtcgaggtacgtgggcggggaggctccgaccctgcacaagatgggc
ggctcggactggcagaaggccaaggcccgggcccgcaaggcggtccgcgagatcgccgcc
cagctcatccagctctacgccgcccgcaaggcgtccaagggccacgcgtacgggccggac
accccgtggcagcgggagttggaggacgcgttcccgtacaccgagacgccggaccagctc
gccgcgatcgaagaggtcaagcgggacatggagcagcaggcgccgatggaccggctgatc
tgcggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttcaaggcggtg
caggacggcaagcaggtggcggtgctggtgccgacgacgctgctcgcccagcagcactac
aacacgttcgccgagcggatgagccagttcccggtccagatccggcaactgtcccggttc
cagacgccgaaggaggccgagcagacgctgaccgccgccgcggagggcagcgccgacatc
gtcatcggcacccaccggctgctccagtcggcgacccggttcaagcagctcggcatggtc
atcgtcgacgaggagcagcgtttcggcgtcgagcacaaggaacacctgaagacgctgcgt
acggcggtcgacgtgctgaccatgtcggccaccccgatcccacgcaccctggagatggcg
atcaccggcatccgggagatgtcgacgatcgccaccccgccggaggagcggcacccggtg
ctgacgttcgtcggggcgtacgacgacaagcaggtggccgcgtcgatccaccgcgagctg
ctccgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatcgaccgggcggcc
cgccggctgcgtgagctcgtgcccgaggcccgggtcgcggtcgcgcacggccagctgggc
gaggacgccctggagaaggtcatggtcggcttctgggagaaggagtacgacgtactggtc
tgcaccacgatcgtcgagtccggcatcgacatcccgaacgcgaacacgctgatcgtggag
cgggccgacctgctcggcctggcccagctgcaccagatccgcggccgggtcggccggggc
cgggagcgggcgtacgcctacttcctctacccgccggagaagccgctgaccgagcacgcg
cacgagcggctggccaccatcgcccagcacaccgaactcggtgccggcatgtacgtggcg
atgaaggacctggagatccgtggcgccggcaacctgctcggcggcgagcagtccgggcac
atcgagggggtcggcttcgacctctacgtccggatggtcggcgaggcggtgcagcagttc
aagggcgagcggccggaggaggaggtcgacgtcaagatcgatctgccggtcgacgcgcac
ctgccgcacgactacgtcggcgtggagcgactgcgcctggagatgtaccgcaagctcgcc
gaggcccgcgacgagactcggctgcgcgaggtcgtcgccgagatgaccgaccggtacggc
gccccgcccgagccggtgcagaacctggtcgcggtggccaggttccggctgctggcccgg
acgtacgggctgaccgacgtgtcgttgcagggccggcacctgcggttcggaccgttgccg
ctgccggactccaagcagatgcggctcaagcgctaccacccggactcggtctacaagtcg
gccaccgaccaggtcagcgtgccccggccgacgacccgacggatcggcggcgagccgctg
cgcgaccaggcactgctggactggtgcgcccagttgctctccgatgtcctcggcgacccg
gccggggcccgccccggccgcgcgtga
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