KEGG   Polymorphospora rubra: Prubr_40790
Entry
Prubr_40790       CDS       T07190                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
pry  Polymorphospora rubra
Pathway
pry03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pry00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Prubr_40790 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pry03019]
    Prubr_40790 (rnj)
Messenger RNA biogenesis [BR:pry03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Prubr_40790 (rnj)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: BCJ67058
UniProt: A0A810N5N2
LinkDB
Position
4391857..4393545
AA seq 562 aa
MSQAHVEMELPPPLPEGGLRVIPLGGLGAIGRNMTVFEFDGKLLIVDCGVLFPDVEQPGV
DLILPDFAPILDRLDDVQAIVLTHGHEDHIGAVPYLLAHKADIPLVGSQFTLALVEAKLA
ERRIEPYTLTVQEGGRERLGPFECEFFAVNHSIPDALAVAIRTPAGLVLHTGDFKMDQLP
LDGRVTDLAGFARLGAEGVDLLLSDSTNAEIPGFVTPEREIGPVLDSIFAKARGRIIVAS
FASHVHRVQQVLDSAGEHGRKVALIGRSMVRNMGIARDLGLLQIPPGLVVGLDEATALPP
DRIVLMSTGSQGEPMSALGRMSTGDHRHITIAPGDTVVLASSLVPGNETSVYRVINQLSR
AGATVIHKDVAKVHVSGHAPAGELLYLLNVVRPSNLLPVHGEWRHLRAHARLGIESGVAA
DRVVLCEDGDVVDLVEGRATLVGHVKSRYVYVDGLAVGDVGESLLTERRILGDGGFIAAT
VVVDSVTGKVVGGPTVSAKGFSDDPAAFNPVIPLITEALNRAASEGITDPHQLGQLVRRT
VGRWVNDAYRRRPMIVPTVVEV
NT seq 1689 nt   +upstreamnt  +downstreamnt
gtgagtcaggcgcacgtcgagatggaactgcccccgccgctgcccgagggcgggctgcgg
gtcatcccgctcggcgggctgggtgccatcggccgcaacatgaccgtcttcgagttcgac
ggcaagctgctgatcgtcgactgcggtgtgctcttcccggacgtcgagcagccgggcgtc
gacctgatcctgcccgacttcgcgccgatcctcgaccggctcgacgacgtacaggcgatc
gtgctcacccacgggcacgaggaccacatcggagcggtgccgtacctgctcgcgcacaag
gccgacatcccgctcgtcggctcgcagttcaccctcgccctggtcgaggcgaagctcgcc
gagcggcggatcgagccctacacgctgaccgtgcaggagggtggacgcgagcggctgggg
ccgttcgagtgcgagttcttcgcggtcaaccactcgatcccggacgcgctcgcggtggcg
atccgcaccccggccggcctggtgctgcacaccggcgacttcaagatggaccagttgccg
ctcgacggccgggtcaccgacctcgccggcttcgcccggctcggtgccgagggcgtcgac
ctgctgctgtcggactccaccaacgcggagatccccggcttcgtcacccccgagcgcgag
atcggtccggtcctcgactcgatcttcgccaaggcccgtggccggatcatcgtggcgtcg
ttcgcctcgcacgtgcaccgggtgcagcaggtgctcgactcggccggtgaacacggccgc
aaggtcgcgctgatcggtcgctcgatggtgcgcaacatgggcatcgcccgcgacctgggc
ctgctgcagatcccgccgggcctggtcgtcggcctcgacgaggcgaccgcgctgccgccg
gaccggatcgtgctgatgtcgaccggctcgcagggcgaaccgatgagcgcgctgggccgg
atgtccaccggcgaccaccggcacatcacgatcgcccccggcgacaccgtcgtgctggcc
agctcgctggtgccgggcaacgagacctcggtctaccgggtcatcaaccagctctcccgg
gccggcgcgaccgtcatccacaaggacgtcgccaaggtgcacgtctccgggcacgcgcca
gccggcgagctgctctacctgctcaacgtcgtacggccgagcaacctcctgccggtgcac
ggcgagtggcggcacctgcgggcccacgcccggctcggcatcgagtcgggcgtcgcggcc
gaccgggtcgtgctctgcgaggacggcgacgtcgtcgacctggtcgaggggcgggccacc
cttgtcggccacgtcaagagccggtacgtctacgtcgacgggctcgccgtcggcgacgtc
ggcgagtcgctgctcaccgagcgccgcatcctcggcgacggcggcttcatcgcggcgacg
gtcgtggtcgactcggtcaccggcaaggtggtcggcgggccgacggtgtcggcgaagggc
ttctccgacgacccggcggcgttcaacccggtcatccccctgatcaccgaggccctcaac
cgggccgcctcggaaggcatcaccgatccgcaccagctcggccaactggtccggcgtacg
gtcggccgctgggtcaacgacgcctaccggcgccggccgatgatcgtgccgacggtcgtc
gaggtctga

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