Polymorphospora rubra: Prubr_40790
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Entry
Prubr_40790 CDS
T07190
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pry
Polymorphospora rubra
Pathway
pry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Prubr_40790 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pry03019
]
Prubr_40790 (rnj)
Messenger RNA biogenesis [BR:
pry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Prubr_40790 (rnj)
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BCJ67058
UniProt:
A0A810N5N2
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Position
4391857..4393545
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AA seq
562 aa
AA seq
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MSQAHVEMELPPPLPEGGLRVIPLGGLGAIGRNMTVFEFDGKLLIVDCGVLFPDVEQPGV
DLILPDFAPILDRLDDVQAIVLTHGHEDHIGAVPYLLAHKADIPLVGSQFTLALVEAKLA
ERRIEPYTLTVQEGGRERLGPFECEFFAVNHSIPDALAVAIRTPAGLVLHTGDFKMDQLP
LDGRVTDLAGFARLGAEGVDLLLSDSTNAEIPGFVTPEREIGPVLDSIFAKARGRIIVAS
FASHVHRVQQVLDSAGEHGRKVALIGRSMVRNMGIARDLGLLQIPPGLVVGLDEATALPP
DRIVLMSTGSQGEPMSALGRMSTGDHRHITIAPGDTVVLASSLVPGNETSVYRVINQLSR
AGATVIHKDVAKVHVSGHAPAGELLYLLNVVRPSNLLPVHGEWRHLRAHARLGIESGVAA
DRVVLCEDGDVVDLVEGRATLVGHVKSRYVYVDGLAVGDVGESLLTERRILGDGGFIAAT
VVVDSVTGKVVGGPTVSAKGFSDDPAAFNPVIPLITEALNRAASEGITDPHQLGQLVRRT
VGRWVNDAYRRRPMIVPTVVEV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaggcgcacgtcgagatggaactgcccccgccgctgcccgagggcgggctgcgg
gtcatcccgctcggcgggctgggtgccatcggccgcaacatgaccgtcttcgagttcgac
ggcaagctgctgatcgtcgactgcggtgtgctcttcccggacgtcgagcagccgggcgtc
gacctgatcctgcccgacttcgcgccgatcctcgaccggctcgacgacgtacaggcgatc
gtgctcacccacgggcacgaggaccacatcggagcggtgccgtacctgctcgcgcacaag
gccgacatcccgctcgtcggctcgcagttcaccctcgccctggtcgaggcgaagctcgcc
gagcggcggatcgagccctacacgctgaccgtgcaggagggtggacgcgagcggctgggg
ccgttcgagtgcgagttcttcgcggtcaaccactcgatcccggacgcgctcgcggtggcg
atccgcaccccggccggcctggtgctgcacaccggcgacttcaagatggaccagttgccg
ctcgacggccgggtcaccgacctcgccggcttcgcccggctcggtgccgagggcgtcgac
ctgctgctgtcggactccaccaacgcggagatccccggcttcgtcacccccgagcgcgag
atcggtccggtcctcgactcgatcttcgccaaggcccgtggccggatcatcgtggcgtcg
ttcgcctcgcacgtgcaccgggtgcagcaggtgctcgactcggccggtgaacacggccgc
aaggtcgcgctgatcggtcgctcgatggtgcgcaacatgggcatcgcccgcgacctgggc
ctgctgcagatcccgccgggcctggtcgtcggcctcgacgaggcgaccgcgctgccgccg
gaccggatcgtgctgatgtcgaccggctcgcagggcgaaccgatgagcgcgctgggccgg
atgtccaccggcgaccaccggcacatcacgatcgcccccggcgacaccgtcgtgctggcc
agctcgctggtgccgggcaacgagacctcggtctaccgggtcatcaaccagctctcccgg
gccggcgcgaccgtcatccacaaggacgtcgccaaggtgcacgtctccgggcacgcgcca
gccggcgagctgctctacctgctcaacgtcgtacggccgagcaacctcctgccggtgcac
ggcgagtggcggcacctgcgggcccacgcccggctcggcatcgagtcgggcgtcgcggcc
gaccgggtcgtgctctgcgaggacggcgacgtcgtcgacctggtcgaggggcgggccacc
cttgtcggccacgtcaagagccggtacgtctacgtcgacgggctcgccgtcggcgacgtc
ggcgagtcgctgctcaccgagcgccgcatcctcggcgacggcggcttcatcgcggcgacg
gtcgtggtcgactcggtcaccggcaaggtggtcggcgggccgacggtgtcggcgaagggc
ttctccgacgacccggcggcgttcaacccggtcatccccctgatcaccgaggccctcaac
cgggccgcctcggaaggcatcaccgatccgcaccagctcggccaactggtccggcgtacg
gtcggccgctgggtcaacgacgcctaccggcgccggccgatgatcgtgccgacggtcgtc
gaggtctga
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