Paenibacillus rhizovicinus: GZH47_03625
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Entry
GZH47_03625 CDS
T06983
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
prz
Paenibacillus rhizovicinus
Pathway
prz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZH47_03625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prz03019
]
GZH47_03625
Messenger RNA biogenesis [BR:
prz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GZH47_03625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF3502
Lactamase_B_6
DUF2201
Motif
Other DBs
NCBI-ProteinID:
QHW30011
UniProt:
A0A6C0NV72
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Position
complement(809786..811465)
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AA seq
559 aa
AA seq
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MSKKNIQDKLLIFALGGVGEIGKNMYVVQYGNDIVVVDAGLKFPEEDMLGIDIVIPDITY
LTENRDKVRGILITHGHEDHIGGLPYVLKHLNVPLYATKLTLGLIEGKLKEAGLLGETKR
ILINAESEVQLGSIKASFFKTNHSIPDSVGVCLDTPEGTVVHTGDFKFDHTPVNNQYADL
QRIADIGRRGVLALLSDSTNAERAGFTPSESMIGSELEDIFRKATQRVVVATFASNVHRI
QQVVNAAIATKRKIAVVGRSMVNVVTIASELGYLNIPEGTIIEPEEINKMAADRVAVLST
GSQGEPMSALTRMARSTHRKVDIMPGDTVIIAATPIPGNERYVGRTVDELFRLGANVIYG
PGSVSGVHVSGHGSQEELKLMLNLIRPKYFIPIHGEYRMLRQHALLGEAVGIERENIFIV
DNGDTVEFQAGTARKGSKVPAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGAILSGPDIISRGFVYVRESEGLLEEANRIVTSTLHKLMNDKVNEWASLKTNVKDALGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaagaaaaatatccaggataagctgcttatcttcgcgctaggcggcgttggtgaa
atcggtaagaacatgtacgtcgttcaatacggtaacgatatcgttgtggtagacgcgggt
cttaaattccctgaagaagatatgctcggtattgatattgtcatccctgacattacgtac
ttaacagagaatcgcgataaagtaagaggtattctgattacccacggtcacgaggatcat
atcggcggattgccatatgtattgaagcacctcaacgttccgctgtatgctaccaagctg
acgctcggtctcattgaaggtaaattgaaggaagcgggcctgcttggcgaaacgaaacgc
attctgatcaacgcagaaagcgaagtgcagctgggctccatcaaagcatccttcttcaaa
acgaatcacagtattccggattcggtcggcgtatgtttggacacgcctgaaggaactgtc
gtgcatacgggcgactttaaattcgatcatacacctgtaaataatcaatatgcggattta
cagcgcattgcggatattggccgtcgtggcgttctggcgcttctgtcggacagcacgaat
gccgagcgcgcagggtttacgccttcggaaagcatgatcgggtctgagctggaagatatt
ttccgcaaagcgacgcagcgcgtcgtagtagcgacatttgcatcgaacgtacaccgtatt
cagcaagtcgtgaatgcggccatcgcgacgaaacgcaaaattgccgttgtcggacgcagc
atggtgaacgtcgttacgatcgcatcggaacttggatacttgaatattccggaaggcacg
attatcgagcctgaagagattaataaaatggccgctgaccgtgttgcagtattatctacg
ggcagccaaggcgagccgatgtccgcacttacgcggatggcgcgctcgacgcaccgcaaa
gtcgatattatgcctggtgacaccgttatcatcgcagctacgccaattccgggtaacgaa
cgttatgtcggccgtacggttgacgaattgttccgactcggcgctaacgtcatttacgga
ccgggctctgtttcgggcgttcacgtttccggtcacggaagccaggaagaattaaagctg
atgctcaacctgattcgcccgaaatacttcattccgattcacggtgaatatcgtatgctc
cgtcagcacgctttgctgggcgaggcagtcggcatcgaacgcgaaaatatcttcattgtc
gacaatggggatacggtggaattccaagccggcacggctcgcaaaggcagcaaagtgcct
gcaggcaacgtgctgattgacggactgggcgttggcgacgtaggtaacatcgtgcttcgc
gaccgtaaattactgtcccaggatggtatccttgtcgtcgtcgtgacgttaagcaagcaa
gacggtgcgatcttgtccggtccggacattatctcccgcgggtttgtctatgttcgcgaa
tcggaaggactgctagaagaggcaaaccggatcgtaacttcgacgctgcacaagctgatg
aacgataaagtgaacgaatgggcatcgctcaaaacgaacgttaaggatgcgctcggccgc
ttcttgtacgagcagacgcgtcgccgtccgatgattttgccgattattatggaagtttaa
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