Paenibacillus rhizovicinus: GZH47_03980
Help
Entry
GZH47_03980 CDS
T06983
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prz
Paenibacillus rhizovicinus
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prz03032
]
GZH47_03980 (topA)
03400 DNA repair and recombination proteins [BR:
prz03400
]
GZH47_03980 (topA)
Enzymes [BR:
prz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GZH47_03980 (topA)
DNA replication proteins [BR:
prz03032
]
Prokaryotic type
DNA Topoisomerases
GZH47_03980 (topA)
DNA repair and recombination proteins [BR:
prz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GZH47_03980 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
DUF7340
Lar_restr_allev
Zn_ribbon_PaaD
zf_Rg
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QHW30078
UniProt:
A0A6C0NV96
LinkDB
All DBs
Position
complement(881396..883498)
Genome browser
AA seq
700 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKFIVKASMGHIRDLPKSQIGVEVENDFHPKYITIRGK
GSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHYLEIDESDTCRVVFNEITKQAVKD
AFKTPRPINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLIIDREN
EIDAFVPEEYWSITAQLKKGSASFEAKFHSLNGEKIELGNEAQMQTVLDAMGSSAFTVGE
VKEKERQRNPAAPFTTSSLQQEAARKLGFRASKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRISPIAQEEAKGYIEEKYGPSYAPEQPRVYAKKNSNAQDAHEAVRPTSVLRDPDSM
KEFLSRDQFRLYKLVWERFIASQMTSAVLDTMTVDFTVGNGAVFRAVGSKVKFPGFMKIY
VEGNDDGTTDEEKFLPPLVVSESIPADSVEPKQHFTQPPPRYSEARLVRMMEEIGIGRPS
TYAPTLETIQKRGYVAMEEKKFIPTELGDLVIQMMEEFFPEILDAEFTAHMEEDLDHVED
GKEDWVRVLGNFYESFEKRLEVAEEEMKEVELQDEISDEICEKCGRHLVYKMGRFGKFLA
CSGFPDCRNTKPIVKDIGVDCPKCKVGKIIERRSKKGRYFYGCDQYPGCDYVSWDKPASK
PCPNCGSLMVEKRNRSGAKLACTQCEYNEEVVDEQDSAEL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcacttgtcattgtagaatcaccggcaaaggcgaaaacgatcggtaaatat
ctcggcagcaagttcatcgtcaaagcatcgatgggtcatatccgcgacttgcccaagagt
cagatcggcgtcgaagtagaaaatgattttcatcctaaatatattacgattcgcggaaaa
ggcagcgtcctgaaagaactgaaggatgccagcaagaaagtaaagaaagtctatctcgca
gctgaccctgaccgcgagggagaagcgatcgcatggcatctggcgcattatctcgaaatc
gacgaaagcgacacctgccgtgtcgtatttaatgaaattacgaaacaagcggtcaaggat
gctttcaagacgccgcggccgattaatatggatttggttaatgcccagcaggcgagacgg
attctcgatcggctcgtcgggtacaaaatcagcccactattatggaagaaagtcaaaaaa
gggctctcggcaggacgcgttcaatcggttgcggtcaagctcataatcgatcgcgaaaac
gaaatcgacgcattcgttccagaagagtactggagcataactgcccagttgaagaaaggc
tcagcttcgttcgaagccaaatttcattctttgaacggcgagaagatcgagcttggcaac
gaagcgcaaatgcaaacggttctagacgcaatggggtcgtcggcattcacggtcggcgaa
gtgaaggaaaaggagcgccagcgtaatccggctgctccgttcacgacaagctccttgcag
caagaagcggcccgtaagctaggcttccgagcttccaaaacaatgtctgtcgcgcagcag
ctgtacgagggcgttgaactcggcaaagaaggtacggtaggtttgatcacctacatgaga
acggactcgacgcgcatttccccgatcgcacaggaagaagcgaagggctacatcgaagag
aaatacggtccttcctacgctcctgaacagcctcgcgtgtacgcgaagaaaaacagcaat
gcgcaggacgcccatgaagcggttcgtccgacttccgtgctgcgtgatcccgattccatg
aaggaatttttaagccgggatcaattcagattgtataagctcgtttgggaacgtttcatt
gccagccaaatgacttccgcggtgctggatacgatgacggttgatttcacggttggaaac
ggagccgtattcagggccgtcggttcgaaagtgaagttccccgggttcatgaagatttat
gtcgaaggcaacgatgacggaacgaccgacgaagagaagtttcttccgccgcttgtcgtt
tccgagtctatcccggcggattccgttgaaccgaaacagcatttcacgcagccgccgcct
cgttattcagaagcgcgacttgtccgcatgatggaggaaatcgggatcggccgtccgagt
acatatgcgccgacgctggaaacgatccagaagcgcgggtatgtcgcgatggaagagaag
aagttcattccgacggagcttggcgatctcgtcattcaaatgatggaggagttcttcccg
gaaatactggatgcggaatttaccgcccatatggaagaagaccttgaccatgtggaagac
ggtaaagaggattgggttcgcgtgcttggcaacttctacgagtcattcgagaaacggctc
gaggtcgcggaagaggaaatgaaggaagtcgagctgcaggatgaaatctccgatgagatt
tgcgagaaatgcggccggcatttggtttacaaaatgggtcgtttcgggaaattccttgca
tgctccggatttccggactgccggaatacgaagccgatcgtcaaggatataggcgtcgat
tgtccgaaatgcaaagtcggcaaaatcatcgaacgccgaagcaaaaaaggacgttatttt
tatggctgtgatcaatatccgggttgcgattacgtctcttgggataaaccagccagcaag
ccttgtccgaattgcggcagtctaatggtagagaagcgtaatcgaagcggagcgaagctt
gcgtgtacgcagtgcgaatataacgaagaagtggtagatgagcaggattccgccgaattg
tag
DBGET
integrated database retrieval system
