Paenibacillus rhizovicinus: GZH47_05875
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Entry
GZH47_05875 CDS
T06983
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
prz
Paenibacillus rhizovicinus
Pathway
prz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GZH47_05875 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prz03021
]
GZH47_05875 (rpoD)
Transcription machinery [BR:
prz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GZH47_05875 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QHW30420
UniProt:
A0A6C0NW41
LinkDB
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Position
complement(1259494..1260618)
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AA seq
374 aa
AA seq
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MANDQHTELDTEQKLELVKEQLIEHGKKRSSLTYKEIMEKLSPFDQDPEQIDEFFEQLDD
IGIEVVNENDDLPISNRDDQEREHDDFNFDDDLALPPGIKINDPVRMYLKEIGRVPLLSA
DDEVELAKRIEHGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREP
SPEEIAAEMDLSTEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYE
LLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaacatactgaattggatactgaacagaagctggaactcgtcaaagaa
cagctgattgaacacggtaaaaagagatcctcccttacgtacaaagaaattatggagaag
ctttcaccgttcgatcaggatccggaacaaatcgatgagttttttgaacagcttgacgat
atcggcattgaagtcgtgaacgagaacgacgatcttccgataagcaaccgggatgatcag
gaacgcgagcatgacgacttcaacttcgatgatgacttggcgctaccgcccggcattaaa
ataaacgatccggtacggatgtacctgaaagaaatcggccgcgtaccgctcttgtctgcc
gatgacgaagtcgaactggcgaaacgcatcgagcatggcgacgaagaagccaaacgcaga
ctggctgaagcaaacctcaggctcgtcgtcagcatcgcgaaacgttacgttggacgcggc
atgctcttcttggatttgattcaagagggtaacatgggcttgatcaaagcagttgagaag
ttcgaccatacgaagggttataaattcagtacgtacgcaacttggtggatcagacaagcg
atcacgcgcgccatcgcggaccaagcgcgtacgatccggattccggttcacatggtcgaa
acgatcaacaagctcgttcgggtatcccgtcaattgcttcaggagctgggccgcgagccg
agcccggaagagattgcggcggaaatggatctgagcaccgagaaggttcgggagatcatg
aaaatcgcgcaggagccggtttcgctcgagactccgatcggggaagaagacgattcgcat
ttgggcgactttatcgaggatcaagaggcgcttgctccggcggatgcggcggcttacgag
ctcttgaaggaacagctggaggacgtgctggatacgctcaccgagcgtgaagaaaacgtg
cttcgccttcgcttcggactcgatgacggccgtacgcgcaccttggaagaagtcggcaaa
gtgttcggcgtcacccgtgaacggattcgtcaaatcgaggcaaaagcgcttcgtaaactt
cgtcacccttcccgcagcaagcggctgaaggatttcctagaataa
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