Paenibacillus rhizovicinus: GZH47_06815
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Entry
GZH47_06815 CDS
T06983
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prz
Paenibacillus rhizovicinus
Pathway
prz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZH47_06815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prz03019
]
GZH47_06815
03009 Ribosome biogenesis [BR:
prz03009
]
GZH47_06815
Enzymes [BR:
prz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GZH47_06815
Messenger RNA biogenesis [BR:
prz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GZH47_06815
Ribosome biogenesis [BR:
prz03009
]
Prokaryotic type
rRNA helicases
GZH47_06815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4240
CA109-like
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHW30591
UniProt:
A0A6C0NWT1
LinkDB
All DBs
Position
complement(1462596..1464212)
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AA seq
538 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEESTPIQSKAIPIALTGTDLIGQAQTGTGKTAAFGIPL
VNKIPVTEDRIVALIMTPTRELAIQVSEEIGKLTRYKGLRSLPIYGGQEIGRQIRALKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTVILDEADEMLDMGFMEDITSILSLVPEQRHTML
FSATMPANIRKLADQFLKEPQHVSVIPTQVSAPTIDQAYIEVHERQKFDALSRLLDMESP
ELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRELDHMHFIEKVTR
HKIAKKPLPSIAEAIEGKQRVTAERILEALDGDAVHEFKAIAIQLLEQYDSVNLLAAAIK
LITGEKKDVNIELTPEDPIRAKKRRPDVRTSGRRFSGGPFGGGNRTGSGPRGRGEGGGSS
YGGNRGGYGGNRSSSGSSSSSSNSGGGYNRDRDRDGGYRGRNEGRSDAPRRPRPSADE
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgctgaattcggtttggagcctaaagtgctgcaagccataacggagctt
ggattcgaggaatctaccccgatccaatccaaagccattccaattgcgcttaccggtacc
gacctaatcggtcaagctcaaacaggaacgggtaaaacggccgctttcggaatcccgctc
gtcaacaagattccagtaacggaagaccgtatcgtggcgctcatcatgacgccgactcgt
gagcttgcgattcaagtctcggaagaaatcgggaagcttactcgttacaaaggattacgt
tcattgccaatttacggaggtcaagagatcggccgtcaaattcgcgcattgaagaagaag
ccgcaaatcatcatcggtacgccaggtcgtttgctcgaccacattaaccgtaagaccatt
cgtttggatgacgttcaaacggtaatcttggacgaagcggacgaaatgcttgacatgggc
ttcatggaagatattacttccattctttcgctggtgcctgaacaacgccacacgatgctg
ttctcggcaacgatgccggctaacatccgcaaactggcagatcaattcttgaaagagccg
cagcatgtttcggtaattccgacacaagtcagcgcgccaacgattgatcaagcttacatc
gaagtgcacgagcgtcagaaattcgatgctttgagccgtttgctcgacatggaatcccct
gagcttgcgatcatcttcggccggacgaaacgccgcgtcgacgaactgagcgaagcgttg
cagaagcgcggctattcggccgacggcctgcatggcgatttgtcccagaatcagcgtgac
gcggtcatgcgtaaattccgtgacggcagcatcgacgttctcgttgcaacggacgttgcg
gcacgcggactcgacgtttccggcgtaacgcatgttatcaacttcgacttgccgcaagat
ccggagagctatgtacaccgtatcggccgtactggccgcgccggcaaagaaggcacggcg
tggtcgttcgtaacgccgcgcgagcttgatcacatgcacttcatcgagaaagtaacgcgc
cacaaaatcgccaaaaagccgcttccaagcattgcggaagcgatcgaaggcaaacaacgc
gtaacggctgagcgcattcttgaagcattggacggcgacgccgttcatgagttcaaagcc
attgcgatccagcttctcgagcaatacgattccgtcaatctgcttgccgcggctattaag
ctgatcactggcgagaagaaagacgtgaatattgaattgacgcctgaagatccgatccgt
gcgaagaaacgcagaccggatgttcgcacgagcggacgccgtttctccggcggtccattc
ggcggcggcaaccgtactggcagcggccctcgtggacgcggcgaaggcggcggcagcagc
tacggcggcaatcgcggcggctacggcggcaaccgcagctcaagcggctctagcagcagc
agcagcaacagcggcggcggttataaccgcgatcgcgaccgtgacggcggctacagaggc
cgtaacgaaggacgttccgacgctccgcgtcgtccgcgcccttccgcagatgaatag
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