Paenibacillus rhizovicinus: GZH47_18825
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Entry
GZH47_18825 CDS
T06983
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
prz
Paenibacillus rhizovicinus
Pathway
prz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GZH47_18825 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prz03021
]
GZH47_18825 (rpoB)
03400 DNA repair and recombination proteins [BR:
prz03400
]
GZH47_18825 (rpoB)
Enzymes [BR:
prz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GZH47_18825 (rpoB)
Transcription machinery [BR:
prz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GZH47_18825 (rpoB)
DNA repair and recombination proteins [BR:
prz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GZH47_18825 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QHW32662
UniProt:
A0A6C0P827
LinkDB
All DBs
Position
4204929..4208474
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGQLVQYGRRTRRSYARIREVLEVPNLIEIQQKSYEKFLDKDLLELFQDISPIQDFTGN
LMLEFIDYSLGEPKYSVDESKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKNYTATVIPNRGAWLELETDAKDIIY
VRIDRTRKIPVTVLLRALGFGTDAEILDLLGHDEYIRNTLDKDNTDSTEKALIEIYERLR
PGEPPTLDNAKSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLFDPTTGE
ILAEAGQIVDRRLLDELIPFLETNVGFKTYQVANGVLDADSIPLQTISVFSPLDESKVIK
VIANGVIDKAVKHITPADIIASINYFIDLLHGVGSTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHNSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF
IEAPYRWVDPKTAIVTEQIAYLTADEEDNYVIAQANAKLDGDGKFIDDAVIVRYNKQADN
ILTMPTERVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPKSPLVG
TGMEHKSAKDSGVCIVSKHDGIVERVSANEIWVRRVEMVDGKPVTGDLIKHKLHKFMRSN
QGTCINQRPICHKGDIVKKGDILADGPSTEMGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVKEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRVGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD
ELPPGVNQLVRAYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPVEVVLNP
LGVPSRMNIGQVLEVHLGMACKRLGIHAATPVFDGAREYDVFDSMEEAGMQRNGKTILYD
GRSGEPFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSEDEQEIEMKEIDDEDDGASDKLNLNLEGAEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacaacttgttcagtatgggcgtcgcacgcgtagaagctatgcccgcatccgc
gaggtgctcgaagttccgaacctgattgaaatccaacaaaaatcgtacgagaagtttttg
gataaggacttgcttgagcttttccaagacatctcgccgattcaggattttacaggtaat
ttgatgcttgagttcatcgactattcacttggcgagcctaagtattctgtcgatgagtcg
aaagaacgcgacgtgacttatgcagctccgcttcgtgttaaggttcggctcattaacaaa
gaaactggcgaagtgaaagagcaagaagtgttcatgggtgatttcccgctgatgaccgag
acgggtacgtttatcatcaacggcgcagaacgcgtcatcgtcagccaattggttcgttcg
cctagcgtttactttagcacgaaagtggacaaaaacggcaagaaaaattacacggctacg
gtgatcccgaaccgcggtgcttggctggagctcgaaaccgatgcgaaggacattatttat
gtccgtattgaccgtactcgtaaaattcctgtgacggttcttctccgcgcgcttggtttt
ggaacggatgccgagattttggatttgctggggcatgacgagtatatccggaacacgctc
gataaagataacaccgattccaccgaaaaagcgcttatcgaaatttacgaaagacttcgt
ccgggcgagccgccgacgctggataacgccaagagcttgctcgttgcgcgtttctttgat
ccgaagcgctatgacttggcgaatgtcggccgctacaaaattaataagaagctgcatatc
aagaaccggttgttcaatcagcgcttggctgaaacgttgttcgatccgacgacaggagaa
attctggcggaggcaggacaaatcgtggatcgccgtttgctggatgaattgattccgttc
ttggagacgaacgttggcttcaagacgtatcaagttgccaatggcgtacttgatgcggat
agtatacctcttcaaaccattagcgtattctcgccgctggatgagagcaaagtcattaaa
gtaattgccaatggcgttatcgataaggccgttaaacacatcacgcctgcagacatcatc
gcttctatcaactacttcattgatttgcttcacggtgtaggaagcacggacgatatcgac
cacttgggtaaccgtcgtctgcgttccgttggcgagctgttgcagaaccaattccgtatc
ggcttgtcccgtatggagcgcgtcgttcgcgagcggatgtccattcaggacgccaatgcg
attacaccgcaggcgctcattaacatccgtccggtcattgcgtcgatcaaggagttcttc
ggatcctcccagttgtcgcaatttatggatcagacgaacccgcttgccgagcttacgcat
aagcgtcgtctgtccgcactgggacccggcggtttgacgcgtgaacgcgcgggcttcgag
gttagagacgttcataactctcactatggccgtatgtgtccgatcgagacgccagaggga
ccgaatatcggtttgatcaactccttgtctaccttcgctcgtatcaacgagtatggtttc
attgaggcaccttaccgttgggttgatccgaagacggcgatcgtaacggagcaaatcgca
tatttgaccgctgatgaagaagataactacgttatcgcacaagcgaacgccaagctggac
ggcgacggtaaattcatcgatgacgcggttatcgttcgttacaataagcaagcagataac
atcttgaccatgccgacagagcgcgtggactacatggacgtttcgccaaaacaagttgta
tccgtcgcgacggcgctcattccgttcctcgagaacgatgactccaaccgtgcgctcatg
ggatccaacatgcagcggcaagcagttccgcttctcattccgaaatcgccgctggtcggc
acagggatggaacataagtccgcgaaagactccggggtatgtatcgtttccaagcatgac
ggtatcgtcgagcgcgtttcggccaatgaaatttgggtccgccgcgtcgaaatggttgac
ggcaaaccggtaacgggcgacttgattaaacataaactgcacaagtttatgcgttctaac
caaggaacttgtatcaaccaacgtccgatctgccataaaggcgatatcgtgaaaaaaggc
gatatccttgcagacggtccttccacggaaatgggcgaattggcgctcggccgcaacgtt
gtcgttgcgttcatgacgtgggaaggctacaactacgaggatgccatccttctgagcgag
aaactggttaaggaagacgtgtacacgtccattcatattgaggaatatgaatccgaggcg
cgcgacacgaaactgggaccggaagaaattacgcgcgacattccgaacgtgggcgaagaa
gcgctccgcaacctcgatgagcgcggtattatccgcgttggcgccgagatcagcgcaggc
gatattctcgtcggtaaagtaacgcctaaaggggttacggaactgacggcagaagaacgt
ttgctgcatgctatcttcggtgagaaagcacgcgaagtgcgtgacacgagcttgcgcgta
ccgcatggtaccgacggtattgtcgtggacgtgaaagtatttacccgcgagaacggcgat
gagctgcctcctggcgtgaatcaactcgttcgcgcgtacatcgcacagaagcgtaaaatc
tccgaaggcgataaaatggctggacgtcacggtaacaaaggggttatcgcgcgtattctt
cctgaggaagatatgccattcctgccggacggcacgccagtagaggttgttcttaacccg
ctgggcgtaccatcgcggatgaacatcggtcaagtgcttgaggtccacctcggcatggct
tgtaaacgtcttggtattcatgccgcgacgccggtattcgacggtgcgcgcgagtacgac
gttttcgattccatggaagaggcgggcatgcagcgcaacggtaaaacgatcctctacgac
ggacgctccggcgagccgttcgaacgggaagttaccgtcggcgtcatgtacatgatcaag
ctggcgcacatggttgacgataaaatccatgcgcgttccacaggtccttactcgctcgtt
acgcagcagccactgggcggtaaagctcagttcggcggacaacgtttcggtgagatggag
gtttgggcgctcgaggcatacggtgccgcttatacgttgcaagaaattttgaccgtcaag
tccgatgatgtcgtcggccgcgtcaaaacgtatgagtccatcgttaaaggcgagaacgta
ccagagcctggcgttccggagtcgttcaaagttttgatcaaagagctccaaagcttgggt
atggatgtcaaaatcctgagcgaggacgaacaagagatcgaaatgaaagagatcgacgac
gaggacgacggcgcttcagataagctgaacctcaatcttgaaggtgcagaagtcggcgtg
gagtaa
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integrated database retrieval system
