Paenibacillus rhizovicinus: GZH47_23100
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Entry
GZH47_23100 CDS
T06983
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prz
Paenibacillus rhizovicinus
Pathway
prz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZH47_23100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prz03019
]
GZH47_23100
Enzymes [BR:
prz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GZH47_23100
Messenger RNA biogenesis [BR:
prz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GZH47_23100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHW33395
UniProt:
A0A6C0P4L9
LinkDB
All DBs
Position
5133915..5135264
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AA seq
449 aa
AA seq
DB search
MTFEQLQLIPPILKALAKENYKQPTPIQTQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIL
QLLGAKQDRPNGKRVIRSLILTPTRELAIQIADNCKAYGRFMNLRSAVIVGGVSQKAQEQ
ELAQGTDILIATPGRLIDLMNQGFADLRHVQILVLDEADRMLDMGFIHDMKRIIAKLPAK
RQTLFFSATLPNEIKSLVDSLLTNPVKIEITPVSSTAERIRQSLYFVDKPNKLPLLIDLL
QDKSIGSALVFTRTKRGADRVVRGLTKAQIAAQAIHGDKSQTARQTALNNFKNGVTRLLV
ATDIAARGIDIDELSHVINYNLPNIPETYVHRIGRTGRAGLSGIAISFCEHEEIPFLKDI
EKVIKQRVPVIKDHPYPMTMTEPAPATAVAAKAGRAPSATGASRGHSGGTGRNVAGGRSV
AAGRSDDAGSGGTGGSGGRHRRRRPKAGK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaacaattgcaacttattccacctattcttaaagcgttggccaaagaaaat
tataagcagccgacgcccattcaaacgcaggcgattccgccggtgctggccggtcgcgac
ttgttcggctgtgcccagacgggaacaggcaagacggcggcattcttgctgcccatcctg
cagctgctgggagccaagcaggatcgaccgaacggcaaacgcgtcattcgctcgctgata
ttgacgccgacgagggaactggctattcagattgccgataattgcaaagcatacgggcgc
ttcatgaacctgcgcagcgccgtcatcgtgggcggcgtctcgcagaaggcgcaggagcag
gagctcgctcaaggcacggacattctaattgccacgcctggccggctcatcgatctgatg
aatcaagggttcgcggacctgcggcatgtacagattctggtactggacgaagccgaccgc
atgctcgacatgggcttcattcatgacatgaagcgcatcatcgccaagctgcccgccaaa
cggcagacgctgttcttctcggcgacgctgccgaacgagatcaaatcgctggtagactcg
ctgctgacgaatccggtgaaaatcgagattacgcccgtctcctcgacggcagaacggatc
cggcaatcgctttatttcgtggataagccgaataaactgccgctgctgatcgatctcctg
caggacaagtcgatcggcagcgcgctcgtattcacccgcacgaaacgcggcgcggatcgg
gtggttcgcggcctgacgaaggcgcagatcgccgcgcaggcgattcatggggacaagtcg
cagaccgcccgccaaacggcgttgaataatttcaagaacggcgtgacgcgcttgctggta
gcgacggacatcgcggcccggggcatcgacatcgacgagctgtcgcatgtgatcaactat
aacctgccgaatattccggagacgtacgtgcatcggatcggccggaccggccgggcggga
ttaagcgggattgcgatttcgttctgcgagcacgaagaaattccgttcctgaaggacatc
gagaaagtgatcaagcagcgggttccggtcattaaggatcatccgtatccgatgaccatg
acggagcctgctcccgcgacagctgtggcggccaaggccggcagagcgccttcagcaacg
ggcgcttcgcgcggccatagcggcggcaccggtcggaacgtcgccggcggacggagcgtc
gccgccggtcggagcgatgatgccggaagtggaggaactggcggttccggcggccgccat
cgcagaaggcggcccaaagccggcaagtga
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