Stutzerimonas stutzeri A1501: PST_0582
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Entry
PST_0582 CDS
T00511
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psa
Stutzerimonas stutzeri A1501
Brite
KEGG Orthology (KO) [BR:
psa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psa03019
]
PST_0582
Enzymes [BR:
psa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PST_0582
Messenger RNA biogenesis [BR:
psa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PST_0582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
Flavi_DEAD
AAA_19
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABP78288
UniProt:
A4VH37
LinkDB
All DBs
Position
652729..655167
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AA seq
812 aa
AA seq
DB search
MADHESVVLQAPPGAGKTTRVPLALLNEAWLGGQSILMLQPRRVAARAAAERMASELGEK
VGETVGYRIRLESRVGPNTRIEVVTEGILSRRLQDDPSLEGVGLVIFDEFHLRSLDSDLA
LALCLNGRELFRDDQPLKLLVMSATLEGARLSNLLGDAPVVTSEGRMFPVDTVWGQPYQT
GEYIEPKVVRACLDAVHDQQGSILIFLPGQAEIRRVHQDLSDKLAERDDLLLCALHGELD
LNAQRAAIEPAPPGQRKIVLATNIAETSLTIEGVRVVIDSGLERVPRFDPVSGMTRLATQ
RISQASAAQRAGRAGRLEPGICYRLWSQTQHEQMAAYGAPEIHQADLAALALQLARWGVT
PDQLRWLDMPPAAPFTQARDLLGRLGALEADGRLSSHGQAMAEVPAHPRIAHLLLRGHAL
GLGPLACDVAALLGERDVLPGGGADLHSRLAMLEGSQRMSRHAQGAAQRIKQLARQYRSY
QRGSVTEAVADPEHPRWLGCLLALAYPDRVAQQRRAGGGEYRLANGRAAIFTEPDALMKH
SWLVVAELGSRQGQREERIYLATDLDPSLFENVLAEQVTVVDELDWDDRAGALVAERQRK
VGELVLSREPLKELDADARSRALLGLVRKKGLELLPWTSELRQWQARVALLRELDMAQQG
QSKWPCFRDDTLLATLEEWLLPYLNNVSRLSHFSLLDLGSILRGALPWPLPQELDELAPT
HIKVPSGSSIKLDYSESPPVLAVRLQEMFGLADTPRIAGGKLPIKLHLLSPARRPVQVTQ
DLANFWRSTYLEVKKDLKGRYPKLSRNMRAAA
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaccacgagtccgtcgtattacaggcgccaccaggtgccggtaagaccacacgc
gttcccctcgccctgctcaacgaagcgtggttgggcgggcagagcatcctgatgctccag
cctcgccgggtggctgcacgtgccgctgctgagcgcatggccagtgagctgggcgagaag
gtgggtgagaccgttggttaccgtattcgcctagagagtcgggtcggcccgaatacgcgg
atcgaggtagtcactgaaggaatcctttcgcgccggctccaggatgacccttcgctggag
ggggttggtctcgtcatattcgatgaattccaccttcgtagcttggactctgatttggcc
ctcgcgctatgcctgaatggccgtgagctgttccgtgatgaccagccactgaagcttcta
gtgatgtcggcgaccttggagggagctcgtctttcgaacctcctgggtgatgctccggtc
gtgaccagtgaggggcggatgttccccgtcgacactgtatggggtcagccctatcagacc
ggtgagtacatcgagcccaaggtagtccgggcatgcctcgatgctgtccacgatcagcaa
ggaagcatcctgatcttcctgcctggccaggccgaaatccgccgcgtgcatcaggatctc
agcgacaagctggcagagcgggacgacctgctgctatgcgccctgcatggtgaattggat
ctgaatgcgcagcgcgcggctatcgagcctgccccaccaggccagcgcaagatcgtgctg
gctaccaacatcgccgagacgagcttgacaatcgagggcgtgcgggtggtgatcgactct
ggcctggagcgggtgccccggtttgacccggtcagcgggatgacacgcctcgccacacaa
cgcatatcccaggccagtgccgctcagcgtgctggccgtgctggtcgcttggagccgggc
atttgttatcggctttggtctcaaactcaacatgagcagatggcggcctatggcgcccct
gaaattcaccaggccgacttggcggctctggcgctgcaattggcgcgctggggtgttacg
cctgatcagttgaggtggctcgatatgccacccgcagctccctttacccaggcgcgagat
ctgttgggccggttgggggctttggaggcggatggtcgtttgagttcgcatggccaggcg
atggcagaggtgcctgcacatccgcgtattgctcacttgctgctgcgtggtcatgcgctg
gggcttgggccgctcgcttgcgatgtggcggcgctcctaggtgagcgtgatgtgctgcct
ggtggtggggctgatctgcacagtaggctcgcgatgctggagggtagccagcgtatgtcg
cgtcatgcgcagggggcggcacaaaggattaagcagctggctcgtcagtatcggagttac
caacgcggaagcgttaccgaggcagtggctgatcccgagcatcctcgttggcttggctgt
ctattggcgctggcctaccccgaccgggtggctcaacagcgccgagctggaggcggtgag
taccgactcgccaatgggcgtgcggccatattcactgagcctgatgcgctgatgaagcac
tcctggttggtagtggcggagctgggtagccgtcagggccaacgtgaagagcgcatctac
ctcgcgaccgacctcgatccttcgttgttcgaaaacgtactcgcagagcaggtaacggtc
gtcgacgagctcgactgggatgatcgtgctggagccttggtcgctgagcggcagcgcaag
gtgggtgagttggtgttgagccgcgagccgctcaaggagctcgatgcggatgctcgtagt
cgtgcgcttctggggcttgttaggaagaaagggttggaattgctgccttggacgtctgag
ctgcgccaatggcaggcgcgcgtggcgctgctgcgtgagctggatatggcgcagcaaggg
caaagtaagtggccgtgttttcgtgatgacacgttgctcgcaactttggaggagtggctg
cttccgtatttgaacaatgtcagccggttgagtcatttcagcctgttagacctcggctcc
attctgcgcggcgcgcttccttggcctcttccgcaggaactggatgaattggctcccacc
cacatcaaagtgccgtcaggttcgtcgatcaaattggactacagcgagtctccgccagtg
ctggccgtgcggcttcaggagatgttcgggctggcggatacccctcgtattgccggtggc
aaactgccgatcaaactgcacctcctttcgccggcaaggcgacctgtccaagtgacccaa
gatctcgcgaacttctggcgcagcacctaccttgaagtgaagaaggatctgaagggccga
tacccgaagctatcacgtaacatgcgagcagcagcgtga
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