Stutzerimonas stutzeri A1501: PST_0777
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Entry
PST_0777 CDS
T00511
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psa
Stutzerimonas stutzeri A1501
Pathway
psa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PST_0777 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psa03021
]
PST_0777 (rpoB)
03400 DNA repair and recombination proteins [BR:
psa03400
]
PST_0777 (rpoB)
Enzymes [BR:
psa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PST_0777 (rpoB)
Transcription machinery [BR:
psa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PST_0777 (rpoB)
DNA repair and recombination proteins [BR:
psa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PST_0777 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
IniB
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ABP78474
UniProt:
A4VHM3
LinkDB
All DBs
Position
879783..883853
Genome browser
AA seq
1356 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALNYSTEEILDAFYDTNVFHVKGET
LALELVPQRLRGEIATFDIKDDSGKVIVEQGRRITARHINQLDKSGIKELEMPMDYVLGR
TVAKAIVHPATGEIIAECNTELTVDVMAKIVKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFAAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSREDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DGEVTDEIVFLSAIEEADHVIAQASAKLDGRKLVDELVAVRHLNEFTVKAPEDVTLMDVS
PKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVCV
VARRGGVIDSVDASRIVVRVRDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGDV
VARGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQEL
TCVSRDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFIRDGVERDSRALAIEKMQLDEI
RKDLNEEFRIVEGATFERLRSALVGATAEGGAGLKKGVVITDEILDGLEHGQWFKLRMAE
DALNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGD
KMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGL
GEKINLMLEEQRKVAELRKFLHEIYNEIGGRQENLDDLSDQEVLDLANNLRKGVPMATPV
FDGAKEREIKAMLKLADLPESGQMQLFDGRTGNAFERTTTVGYMYMLKLNHLVDDKMHAR
STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK
NIVDGDHRMEAGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttaccgcac
gtgatggacgtgccgtatcttttggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagttccgcgacattggcttgcatgcagccttcaaatccgtt
ttcccgattatcagctattccggcaatgcagcgctggaatacgtcggctatcgcctgggc
gagccggctttcgatgtcaaggaatgtgtcctgcgcggcgtgaccttcgccgttccgctg
cgcgtcaaggtgcgcctgatcattttcgacaaagagtcgtcgaacaaggccatcaaggac
atcaaggaacaggaagtctacatgggggaaatccccctcatgaccgagaacggtaccttc
atcatcaacggtaccgaacgcgtcatcgtttcccagctgcatcgttcgccgggcgtgttc
ttcgatcatgaccgcggcaagacccacagctccggcaagctgctgtactctgcgcgcatc
attccttaccgcggctcctggctggacttcgaattcgatccgaaggacgcagtgttcgtc
cgtatcgaccgtcgccgcaagttgccggcttcggttcttctgcgtgcgctcaattacagc
accgaagagatcctggacgccttctacgataccaacgtcttccacgtcaaaggcgaaacc
ctggcgctggaactggtaccgcagcgtctgcgcggcgagatcgctactttcgacatcaag
gatgacagcggcaaagtcatcgtcgagcagggccgtcgcatcaccgctcgccacatcaac
cagctcgacaagtccggcatcaaagaactcgagatgccaatggactacgtcctgggtcgt
accgtcgccaaggcgatcgtgcatccggccactggcgagatcatcgccgagtgcaacacc
gagctgaccgtcgacgtcatggcgaagatcgtcaaggcgcaggtcgtacgcttcgagacg
ctgtacaccaacgacatcgattgtggtccgttcatttccgacacgctgaagatcgattcg
accaccaatcagctcgaagcgctggtcgaaatctatcgcatgatgcgcccgggcgagccg
ccaaccaaggacgccgccgagacactgttcaacaacctgttcttcgctgccgagcgctac
gacctgtcggctgtcggccggatgaagttcaaccgccgtatcggtcgtaccgagatcgag
ggctccggcgtactgagccgtgaggatatcgtcgcggttctgaagaccctggtcgacatc
cgtaacggcaagggcatcgttgacgacatcgatcacctgggtaaccgtcgcgtgcgctgt
gtcggcgaaatggccgaaaaccagttccgcgttggcctggtgcgcgtcgagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaatgcc
aagccggttgcggcggcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctttcggagatcacccacaagcgccgcgtttccgcactcggcccg
ggcggtctgacccgtgagcgtgccggcttcgaggtgcgtgacgtgcacccgactcactac
ggccgcgtctgcccgatcgaaactccggaaggtccgaacatcggtctgatcaactcgctg
gccgcctacgcccgcaccaaccagtatggcttcctagaaagtccgtaccgagtggtcaag
gatggcgaagtcaccgacgagatcgtattcctctcggcaatcgaagaagccgaccacgtc
atcgctcaggccagcgccaagctggacggtcgcaagctggtcgacgagctggtggctgtg
cgtcatctgaacgaattcaccgtcaaggcgccggaagacgtgaccctgatggatgtctct
ccgaagcaggtcgtctccgtcgctgcctcgctgattccgttcctcgagcacgacgacgcc
aaccgcgcgctgatgggttccaacatgcagcgtcaggccgtgccgaccctgcgttcggac
aagccgctggtaggtaccggcatggagcgcaacgtggcacgcgactccggcgtctgcgtg
gtcgctcgtcgcggcggcgtgatcgactcggtcgatgccagccgtatcgtggtgcgcgtg
cgtgacgatgaggtcgagaccggcgaagcgggtgtcgacatctataacctgaccaagtac
acccgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgcaagggtgacgtg
gtggcgcgtggcgacatcatggccgacggtccgtccaccgacatgggcgagctggcactg
ggtcagaacatgcgcgtcgcgttcatgccgtggaacggctacaacttcgaggactccatc
ctcctctcggagcgcgtggttcaggaagaccgttttaccactatccatatccaggaactg
acctgcgtgtcgcgcgacaccaagctcggcccagaggagatcaccgcagacatcccgaac
gtgggtgaggctgcgctgaacaagctggacgaggccggtatcgtctacgtcggtgccgaa
gtcggcccaggcgacatcctggtcggcaaggtgacgccgaagggcgagacccagctgacc
ccggaagagaagctgctgcgtgcgatcttcggtgagaaggcttccgacgtgaaagacacg
tccctgcgtgtgccgaccggcaccaagggcaccgtcatcgacgtgcaggtgttcatccgc
gacggcgtcgagcgcgactcccgtgcgctggccatcgagaagatgcagctcgacgagatc
cgcaaggacctcaatgaagagttccgtatcgtcgaaggcgccacgttcgagcgtctgcgc
tcggccttggtcggtgcgactgccgagggcggtgcaggtctgaagaagggtgtcgtgatc
accgacgagatcctcgacgggctcgagcatggccagtggttcaagctgcgcatggccgaa
gacgcgctgaatgagcagttggagaaggcccaggcctacctctccgatcgccgtcagctg
ctcgacgacaagttcgaagacaagaagcgcaagctgcagcagggcgacgacctcgcaccg
ggcgtgctgaagatcgtcaaggtttacctggccatcaagcgtcgcatccagccgggcgac
aagatggccggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaagac
atgccgcatgatgccaacggtacgccggtggacatcgtcctgaacccgctgggtgtaccg
tcgcgtatgaacgtcgggcagatcctcgaaacccacctgggccttgcggccaagggcctg
ggcgagaagatcaacctgatgctcgaagagcagcgcaaggtcgccgagctgcgcaagttc
ctgcacgagatctacaacgagatcggcgggcgtcaggagaatctggacgacctgagcgat
caggaagtgctggacctggcgaacaacctgcgcaagggcgtgccgatggcgaccccggtg
ttcgacggtgccaaggagcgcgagatcaaagccatgctgaagctggccgatctgccggaa
agcggccagatgcagctgtttgacggccgtaccggtaatgcgttcgagcgcaccaccacc
gtcggctacatgtacatgctcaagctgaaccacctggtcgacgacaagatgcacgcgcgt
tccaccggttcgtacagcctggtcacccagcagccgctgggcggcaaggcgcagttcggt
ggtcagcgtttcggggagatggaggtctgggccctggaggcctatggcgccgcgtacacc
ctgcaggaaatgctcacggtcaagtcggacgacgtgaacgggcggaccaagatgtacaag
aacatcgtggacggcgatcaccgcatggaggccggcatgccggagtccttcaacgtgctg
atcaaagaaatccgctcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
