Stutzerimonas stutzeri A1501: PST_1729
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Entry
PST_1729 CDS
T00511
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psa
Stutzerimonas stutzeri A1501
Brite
KEGG Orthology (KO) [BR:
psa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psa03032
]
PST_1729 (topA)
03400 DNA repair and recombination proteins [BR:
psa03400
]
PST_1729 (topA)
Enzymes [BR:
psa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PST_1729 (topA)
DNA replication proteins [BR:
psa03032
]
Prokaryotic type
DNA Topoisomerases
PST_1729 (topA)
DNA repair and recombination proteins [BR:
psa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PST_1729 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ABP79407
UniProt:
A4VKA6
LinkDB
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Position
1863140..1865743
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AA seq
867 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPA
LSPKEKAKRQLIARMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREG
EAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDLNRVNAQQARRFLDRVVG
YMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLATAQQAKVRF
EVAREKGEAFKPLNEAQANAALEKLKGASYSVTKREDKPTSSKPSAPFITSTLQQAASNR
LGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAISMVRGFIEGEFGDKYLPEKPNLYS
SKEGAQEAHEAIRPSDVNLRPNQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSVTVE
AGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMSKGDAMKLLKLDPSQHFTKPPAR
YSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSESFNN
LMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAESSENGMRANQPTLTDIP
CKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLIPGDEIAADDEGESESRVLLGK
HRCPICSTAMDAYLLDETHKLHICGNNPDCSGYEIEEGQYRIKGYEGPSLECDKCGSEMQ
LKTGRFGKFFGCTNAECKNTRKLLKNGEPAPPKMDAVKMPELKCEKVDDTYVLRDGASGL
FLAASQFPKNRETRAPLVRELIPHKDEIDPKYHFLLQAPQQDPDGRPAVIRFSRKTKEQY
VQSEVDGKPTGWKAFYDGGKWQVEDKR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggtcatcgtggaatcaccggccaaggccaagacaatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccacatccgcgaccttcccaccagc
ggctcggccaacaaggagccggtcaagcgcggcaaggctgcggcggccgaagcgcctgcg
ctgtcgcccaaggagaaggccaagcgtcaactgatcgcgcgcatgggcgtcgatccggaa
catggctggaaggccaagtacgagatcctgcccggcaaggaaaaggtcatcgaggagctg
cgccgcctggccaaggaagccgacaccatctatctcgcgaccgacttggatagagaaggg
gaggccatcgcttggcacctgcgcgaatccatcggtggcgatgacagccgttacaagcgc
gtggtgtttaacgagatcaccaagaaggcgatccaggaggccttttcccagccgggcgag
ctcgatctgaatcgcgtcaacgcccagcaggcgcggcgcttcctcgatcgggtggttggc
tacatggtttcgccgctgctctgggcgaagatcgcccgcggcctgtctgccggtcgcgtg
cagtcggtggcagtgaaactggtggtcgagcgcgagcgcgagatccgcgccttcgtcccg
gaagaatactgggaagttcatgccgacctggcgactgcccagcaggccaaggtgcgcttc
gaagtcgcccgcgagaagggcgaggcgttcaagccgctgaacgaggcgcaggccaatgct
gcgctggagaagctcaagggcgccagctacagcgtgaccaagcgcgaggacaagccgacc
agcagcaagccatcggcgcccttcatcacctcgaccctgcagcaggcggcgagcaatcgc
ctcggcttcggcgtgaagaagaccatgatgatggcccagcgcttgtacgaagccggttac
atcacctacatgcgtaccgactcgaccaatctgtcggccgacgccatcagcatggtgcgc
ggtttcatcgaaggggagttcggtgacaagtacctgcccgaaaagccgaacctgtattcg
agcaaggagggcgcccaggaagcgcacgaggcgattcgcccgtccgatgtcaacctgcgg
ccgaaccagctgtccggcatggagcgcgatgccgagcgcctgtacgagctgatctggcgc
cagttcgtcgcctgccagatgccgccggcccagtacctgtccaccagcgtgacggtcgag
gccggtgacttcgagctgcgtgccaaggggcgcatcctcaagttcgacggctacaccaag
gtcatgccgcagcagagcaaggctggcgaggacgacgtgctgccggaaatgagcaagggc
gacgccatgaagctgctcaagctcgacccgagccagcacttcaccaagccgccggcccgc
tattccgaagccagcctggtcaaggagatggagaagcgcggcatcggccggccatccacc
tatgcggcgatcatttccaccatccaggatcggggctacgtctcgctgcacaatcgccgt
ttctactcggaaaagatgggcgacatcgtcaccgaacgcctctccgagagcttcaacaac
ctgatggactatggcttcaccgctggcatggaagagcatctggacgacgtcgcccagggc
gagcgcgactggaagcatgtgctggacgagttctacggtgatttccgcaagaagctcgag
gtcgccgagtccagcgagaatggcatgcgtgccaaccagccgaccctgacggacataccg
tgcaaggtctgcggccggccgatgatgatccgcaccgcgtccaccggggtgttcctcggt
tgttccggctacagcctgccgccgaaggagcgctgcaagtccacggtgaacctcattccg
ggtgacgagatcgccgcggatgacgagggcgagtccgaatctcgcgtgctgctgggcaag
catcgctgcccgatctgcagcaccgcgatggatgcctacctgctcgacgagacgcacaag
ctgcacatctgcggcaataacccggactgctccggctacgagatcgaggaagggcagtac
cgtatcaaggggtacgaggggccaagcctggaatgcgacaagtgcggcagcgagatgcag
ctcaagaccggtcgtttcggcaagttcttcggctgcaccaacgccgaatgcaagaacacc
cgcaagctgctgaagaatggcgagccggcgccgccgaagatggatgcggtgaagatgccg
gagctcaagtgcgagaaggtcgacgacacctacgtactgcgcgatggcgcttccgggttg
ttcctggctgccagccagttcccgaagaatcgcgagacccgcgcgccgctggtgcgagag
ctgattccccacaaggacgagatcgatcccaagtatcactttctgctccaggcaccgcag
caggatccggacggccgcccggcggtgatccgcttcagccgcaagaccaaggagcagtac
gtgcagagcgaagtggatggcaagcccaccggctggaaggcgttctacgacggcggcaag
tggcaggtcgaagacaagcgctga
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