Stutzerimonas stutzeri A1501: PST_2631
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Entry
PST_2631 CDS
T00511
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psa
Stutzerimonas stutzeri A1501
Pathway
psa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PST_2631 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psa03019
]
PST_2631 (rne)
03009 Ribosome biogenesis [BR:
psa03009
]
PST_2631 (rne)
Enzymes [BR:
psa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PST_2631 (rne)
Messenger RNA biogenesis [BR:
psa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PST_2631 (rne)
Ribosome biogenesis [BR:
psa03009
]
Prokaryotic type
rRNA processing factors
PST_2631 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ABP80281
UniProt:
A4VMT0
LinkDB
All DBs
Position
2848647..2851859
Genome browser
AA seq
1070 aa
AA seq
DB search
MPNAVSGCHGNRRYYMKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGK
ITRVEPSLEAAFVDFGAERHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKE
ERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNIPADMGLI
VRTAGLGRSSEELQCDLDYLLQLWTAVKDASQDRAAPFLIYQESNVIIRAIRDYLRQDIG
EVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSG
GSIVIDPTEALVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFI
DMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCN
GQGIIRDVESLSLAILRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRA
RIFILPDDHLETPHFEVQRLRDDSPEIIAGQASYEMSQSEAEEVQPVSSTRTLVRQEAAV
KTAPQRSAPATSAAPAPAEAPVATPAQEPSLFKGLIKSLVGLFAGKAEEPQAAAQVEKKP
ASARPQRNDERRSGRQQNRRRDSRNGRDEERKPREERQPREERQPREERQAREERQPREE
RQPRPPREERKPREQAEAAEAQPRRERAPREERKPREERKRELRAPIDEAPTVAQEEQAE
RQPREPRAPREERKPRAEQQAAPADELLQQALEIGETEDAQEANEGAEGNDSERPRRRSR
GQRRRSNRRERQRDANGNEIEDADESNAPVKTEEIAIAATAAALAANTADTEAAPQATLA
EDTVIQTSSEGVATIVEHAPVAQPAASEGIDERKASEEPAPAEAPTDIPVQPAEVAPQEV
AQVAQPEAAPQPAPEPIAEKPEAAPAATPTLTPSGRAPNDPREVRRRQREAERLAKEAAE
AEAKAAAEQPLASPEIVASEPVVDTQPEQPVAEQATDAQPEQAIEPVPAQQQPAVEQQSA
GLVAEQAPADDASEHKPVAPAFDEAPQPAAEESEQPAQGTEPDNREKPQG
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaacgccgtttccggatgccacggaaaccgacggtactacatgaaaagaatgcta
attaacgcaactcagcccgaagagttgcgtgtcgcactggtcgacggccaacgcctgttt
gatctggacatcgaatccggtgcccgcgaacagaaaaaagccaacatctacaagggcaag
atcacccgcgtcgagcccagtctcgaagccgccttcgttgacttcggtgccgaacggcac
ggcttcctccccctcaaggaaatctcccgcgagtacttcagcaaatcgcctgaaggccgc
gtgaacatcaaagacgtcctgcgcgaaggccaggaagtcatcgtccaggtcgaaaaggaa
gaacgtggcaacaagggcgcggccctgaccaccttcatcagccttgccggccgctatctg
gtgctgatgccgaacaacccacgagccggtggtatctcccgccgcatcgagggcgaagag
cgcaatgagctgcgcgaagcgctcaatggcctgaacattccagccgacatgggcctcatc
gtacgcacggccggtctgggtcgctccagcgaagaactgcagtgcgatctcgactacctg
ctgcagctctggaccgcggtgaaagacgcctcccaggatcgcgccgcgccattcctgatc
tatcaggaatccaacgtcatcattcgcgccatccgcgactacctgcgccaggacatcggc
gaagtgctgatcgacagcgtcgaggcgcaggacgaggcgctgagcttcatccagcaggtg
atgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctgttcaaccgc
ttccagatcgaaagccagatcgaaacggccttccagcgtgaagtgaaactgccttccggc
ggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcggcgcgc
gccaccaaaggcggcgacatcgaagagaccgcactgcagaccaacctggaagcggccgag
gagatcgcccgccagctgcgcctgcgcgacatcggcggtttgatcgtgatcgacttcatc
gacatgaccccggccaagaaccagcgcgccgtcgaagaaaagatgcgcgaagcgttggaa
gccgaccgcgcacgcattcaggtcggccgcatttcgcgtttcggcctgctggaaatgtcc
cgccagcgcctgcgcccttccctgggcgaaaccagcggcatcgtctgcccgcgctgtaac
ggccagggcatcatccgcgacgtcgaatcgctgtcactggcgatcctgcgcctgatcgaa
gaagaggccctcaaggatcgcaccgccgaagtccgcgcccgcgtgcccttccaggtcgcg
gcgttcctgctcaatgaaaagcgcaacgccatcaccaagatcgaactgcgcacccgcgcg
cgcatcttcatcctgccggacgaccacctggaaacgccgcacttcgaagttcagcgcctg
cgtgacgacagcccggagatcatcgccggccaggccagctacgagatgagccagagcgag
gccgaagaagtccagccggtcagttcgactcgcaccctggttcgccaggaggccgcggtc
aagaccgcaccgcagcgtagcgcacccgccaccagcgccgctccggcacctgcggaagcg
cccgtggctacgcccgcgcaggaaccaagcctgttcaagggcctgatcaaatcgctggtt
ggtctgttcgcgggcaaggccgaagagccccaggccgcagcgcaagtagagaagaagccg
gcatccgcccgtccgcagcgcaacgacgagcgccgcagcggccgtcaacagaatcgccgc
cgcgattcccgcaatgggcgtgacgaggagcgcaagccgcgtgaagagcgtcagccgcgc
gaagaacggcaaccccgcgaggagcgccaggctcgcgaagaacgtcagccgcgtgaagag
cgccagccacgcccgccgcgcgaggagcgcaagccccgcgagcaggcagaggccgctgaa
gcccagccacgtcgcgagcgtgccccgcgcgaagagcgcaagccccgcgaagagcgcaag
cgtgaactgcgcgctccgatcgacgaagcaccgacagtagcgcaggaggagcaggccgag
cgccagccccgcgagccacgcgccccgcgcgaagagcgcaagccgcgcgccgaacagcag
gcagcgcctgcggatgaactgctgcagcaggccctggaaatcggcgagaccgaagatgct
caggaagccaacgaaggcgcggaaggcaacgacagcgagcgaccacgtcgtcgctcccgt
ggtcagcgtcgtcgcagcaaccgtcgcgaacgccagcgcgatgccaacggcaacgaaatc
gaagacgccgacgagagcaatgccccggtgaagaccgaggaaatcgccatcgccgctact
gccgccgccctggccgcgaacaccgccgacaccgaagccgcgccccaggcgacgctggcc
gaagacacggtaatccagaccagcagcgaaggcgtcgctacgatcgtcgaacacgcgcca
gtcgcccagcctgctgcgagcgaaggcatcgacgagcgcaaagccagcgaagaacctgca
ccagccgaggcgccgaccgatattccggtacagccggccgaggttgcgccgcaagaggta
gcgcaggtcgcccagccggaagcagcgccccagcccgccccggagccgattgccgagaag
cccgaagcggcaccggctgccaccccgacgctgacgccgagcggccgcgcaccgaacgat
ccgcgcgaggttcgtcgccgtcaacgcgaagccgagcgcctggccaaggaggcagctgaa
gccgaagccaaggccgcagcggagcaaccgctggcgagccctgagatcgtcgccagcgag
ccggtcgtggacacgcagccggagcagcccgtcgctgagcaggcaacagacgctcagccc
gagcaggcgatagagcctgtgcctgcccaacagcagcccgcagtggagcaacagtcggcc
ggactggttgccgagcaagcgcctgccgacgatgcaagcgagcacaagccggtagcgccg
gcattcgacgaggcgcctcagcctgctgccgaggaatcggagcagcctgctcaaggcacc
gaaccggacaaccgtgagaagccgcaaggctaa
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integrated database retrieval system
