Paraburkholderia sabiae: QEN71_24480
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Entry
QEN71_24480 CDS
T09203
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psaa
Paraburkholderia sabiae
Pathway
psaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEN71_24480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psaa03019
]
QEN71_24480
Enzymes [BR:
psaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QEN71_24480
Messenger RNA biogenesis [BR:
psaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QEN71_24480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
RPC3_helical
Fe-ADH
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WJZ73269
LinkDB
All DBs
Position
1:complement(5447424..5448875)
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AA seq
483 aa
AA seq
DB search
MSDTATTPTNATFDQFGLHGDILKAIAEQGYTTPTPIQAQAIPVVLGGRDVMGAAQTGTG
KTASFSLPIIQRLLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSTV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQLLVLDEADRMLDMGFLP
DLQRILNLLPSERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
FSPNERKQLADIEKLIKRPLEVQRLTVDTPVRHHHDERGSRRERDDRGGSRRRTTGAHER
PSHGSHHRQQPIDDFFLKPYEPSPSSAAKREEAPAAPQKPASKQPLAALLGGFGMPRKTT
TSN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatacagcaaccacgcctaccaacgcgaccttcgaccagttcggccttcacggc
gacattctcaaagccatcgcggagcagggctacacgacgccgacgccgatccaggcccag
gcgattcccgtcgtgctcggcggccgggacgtgatgggcgccgcccagacgggcacgggc
aagacggcgagcttttcgctccccatcatccagcgtctgctgccgctcgcgaacacgagc
gcgtcgccggcacgtcaccccgtccgcgcgctgatcctcacgccgacgcgcgaactcgcc
gaccaggtcgccgcgaacgtgcagtcgtacgcgaagcacacggcgctgcgcagcaccgtt
gtgttcggcggcgtcgacatgaacccgcaatcggcggaactgcgccgcggcgtcgaaatc
ctgatcgcgacgccggggcgcctgctcgatcacgtgcagcagaagacggccaatctcggc
caggtgcaacttctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctgcct
gatctgcagcgcatcctgaacctgctgccgagcgagcgtcagacgctgctgttctcggcc
acgttctcgcccgaaatcaagaagctcgcgtcgacgtacctgcgcaatccgcagacgatc
gaagtggcgcgcagcaactcgacggcaacgaacgtcacgcagatcgtctacgaagtggcc
gaaggcgacaagacgggcgccgtcgttcaattgatccgcgagcgcagcctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcgcgtcagctggaacgcgac
ggcgtggtcgcgacggcgattcatggcgaccgctcgcaaaacgaacggatgcaggcactg
gacgcgttcaagcgcggcgagatcgaagccctcgtcgcgaccgacgtggccgcgcgcggt
ctcgatatcgccgaactgcccgccgtgatcaacttcgatctgccgttcaacgcggaagac
tacgtgcaccggatcggccggacgggccgtgcgggtgcgtcaggcgatgcgttgtcgctg
ttcagcccgaacgagcgcaagcaactggccgatatcgaaaagctgatcaagcgtccgctg
gaggttcagcgtctgacggtcgatacacccgtgcgtcatcatcacgacgagcggggctcg
cggcgcgagcgcgacgatcgcggcggcagccgccgtcggacgacgggtgcgcacgagcgt
ccgtcgcacggctcgcatcatcgtcagcagcccatcgacgatttcttcctcaagccctac
gagccgtcgccctcgtcggccgccaagcgcgaggaagcgcctgccgcgccacagaagcct
gcgtcgaagcagccgctggcggcgttgctgggtgggttcggaatgccgcgcaagacgacg
acgtcgaattga
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