Paenibacillus sabinae: PSAB_08560
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Entry
PSAB_08560 CDS
T03064
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psab
Paenibacillus sabinae
Pathway
psab03030
DNA replication
psab03430
Mismatch repair
psab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSAB_08560
03430 Mismatch repair
PSAB_08560
03440 Homologous recombination
PSAB_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psab03032
]
PSAB_08560
03400 DNA repair and recombination proteins [BR:
psab03400
]
PSAB_08560
Enzymes [BR:
psab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSAB_08560
DNA replication proteins [BR:
psab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSAB_08560
DNA repair and recombination proteins [BR:
psab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSAB_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF6282
Motif
Other DBs
NCBI-ProteinID:
AHV96644
UniProt:
X4ZY92
LinkDB
All DBs
Position
1910412..1914062
Genome browser
AA seq
1216 aa
AA seq
DB search
MSPFVHLHVHSEYSLLDGAARIADLVRRAGEHGMKSLALTDHGVMYGAIPFYKACKENGI
KPIIGCEVYLTAGSRRERGSRKDQPIYHLILLARNEEGYRNLMRLVTIGQLEGYHYKPRI
DIEALAAHAEGLICLSACLGGEVPQHLLYGRDGEAKKAALRYKEIFGGDFYLELQDHGMS
EQKRVNPKLIALAEETGIPLVATNDVHYLSREDSEVQDVLICIGTGKTVEDEDRLQIGTD
QLYLKSGEEMAALFPHVPEAVANTAVIAERCNLELEFGKHILPAYSPLPEGLDAAAYLRR
LCEAGLEERYKDTPRWESEESRRLAEERLSYELGVIETMGFSDYFLIVWDFIAFCHREGI
ATGPGRGSSAGSLTAYCLRITDVDPLKYNLLFERFLNPERITMPDIDIDFSDERRDEVIS
YVSGKYGEEHVAQIITFGTLAARAAVRDVGRALNLPYGDVDKAAKLIPGTLGISIERALE
SSPDLKALYEGSPKTRDLLDMAMKVEGMPRHASTHAAGVVISRGPLTDAVPLQEGSEGTA
LTQYSMEHLESVGLLKMDFLGLRTLSIIERCMNWVGEMTGSRPDFRNIPDSDEATYAMLG
HGETTGVFQLESAGMRRVLKELKPTVFEDIISVLALYRPGPMEFIPKYIQSKHGLAEVEY
PHPDLIPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKRETLDRERGHFV
RGSLKQGYEEADANAVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVPFMASMLT
AVTGVHRKVAEYVLECRRMDIGVLSPDVNESGVLFTPVDGASGAGGHIRFGLAAIKNVGT
LAVESILEARKERPFDSLLDFCRRVDLRVCNKRVVESLIQAGAFDSLPGHRAQLLAMLDE
TTEAAAKWRKEREELQIQLFDDLVEMPNWDIRYPDVPKFTAGQQLELERELLGLYLSGHP
LDDYAELLEQSGVQRLMDLGEAPDESPAVTAGMIVSVKEIMTKAGKAMAFAEWEDQIERC
EVVLFPEVWKRSRALVDKGALLALRAKVQQQDEGFKLLADEVAQLSPDTLRALLQRRAAA
AARPQGRPAPAGSGAPKAAAAPAAAAGTAAGGRGPAGPPGGLAPAARAPRQAAAPPAAGS
AGQRAYIKITAAAEEGGLLPQLKELLQNHPGAVPTLLFYEREQRLIALSDSFRVKPSPEL
FGLVESLLGPGTIRIK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagccctttcgtgcatctgcatgtgcacagcgaatacagtttattggacggggcggcg
cgcattgccgatctggtgcgccgggccggcgaacacggcatgaagtcgctggcgctgacc
gatcacggagtgatgtacggggcgatccctttttataaagcgtgcaaggagaacggcatc
aagccgatcatcggctgcgaggtgtatctgacggcgggctcgcgccgcgaacgcggcagc
cgcaaggatcagccgatctatcacctgatcctgctggcccggaacgaagaaggctatcga
aatctgatgaggctcgttaccatcggccaactggaaggctatcactataagccgagaatc
gacatagaagcccttgccgcgcatgcggagggccttatttgtctaagcgcctgtctcggc
ggagaggtgccgcagcatctgctctacgggcgggacggtgaggcgaagaaggcggcgctg
cgatacaaggagatcttcggcggagacttctatctggagcttcaggatcacggaatgtcc
gagcagaaaagagtgaatccgaagctgatcgccctcgccgaagaaaccggcatccctctg
gtggccaccaacgatgtgcattatctgtctcgggaggattccgaggttcaggacgtgctg
atctgcatcggaacggggaagacggtggaagacgaggaccggctgcaaatcggaacggat
cagctttatcttaagagcggcgaggaaatggccgcgctgtttccgcatgtcccggaggct
gttgccaacacggcagtcatcgctgaacggtgcaatctggagctggaatttggcaagcac
atactgcccgcctactccccgctgccggaaggactggatgccgccgcctatttaaggcgg
ctgtgcgaagccggccttgaagaacgctacaaagacactccccggtgggaatcggaggag
agccggaggcttgcagaagagcggctgtcctatgagctgggcgttatcgagacgatgggc
ttctccgattattttctgattgtctgggattttatcgccttctgccacagagaaggcatt
gcgacaggaccggggaggggctcgtccgccggaagcctcaccgcctactgcctgcgcatt
acggatgtcgatccgctgaagtataatctgttgttcgaacgcttcctgaaccccgagcgg
attacgatgcccgatatcgatatcgatttcagcgacgagcgccgcgacgaggtcatctcg
tatgtctccggcaaatacggcgaagagcatgtcgctcagatcattacgttcggaaccctg
gcggctcgggcggcggtccgagacgtgggacgggcgctgaaccttccctacggggatgtg
gacaaagcggcgaagctgatcccggggacgcttggcatcagcatcgagcgggcgctggag
agcagtccggatcttaaagcgctgtacgagggcagcccgaagacccgcgatttgctcgac
atggcgatgaaggtcgagggcatgccgcgtcatgcctcgacgcatgccgccggggtcgtt
atctcccgggggccgctcacagatgcggttccgctgcaggagggcagcgaagggacggcg
ttgacccagtattcgatggagcatctggagagcgtcgggctgctgaagatggactttctg
ggccttagaacgctgtcgattatcgagcgctgcatgaactgggtcggagagatgaccggg
agccggccggatttccggaatattcccgacagcgacgaagcgacgtatgcgatgctgggc
cacggcgagacgacgggcgtgttccagctggaatcggcggggatgcgccgcgtgctcaag
gaactgaagccgacggtctttgaggatattatttccgtcctggcgctgtaccgcccgggt
ccgatggaattcataccgaaatatattcagagcaagcacgggcttgccgaagtggaatat
ccccatcccgatctgattccgattctgtccgacacctacggcatcatcgtctatcaggag
cagatcatgcagatcgcttcggcgatggcgggcttctcgctcggcgaagcggatctgctg
cgcagagccgtatccaagaagaagcgcgagacgctggaccgggagcgcggccattttgtc
aggggaagcctgaagcagggctatgaagaggcggacgcaaacgcggtctacgacatgatc
gtccgctttgccgattacggcttccctcgcgcccatgccgcggcttacggcgtgctggcc
ttccagacggcctacctcaaggcgcattatccggtgccgttcatggcttcgatgctgaca
gcggtgacgggcgtccaccgcaaggtggcggaatatgtgctggaatgccggcgcatggac
atcggcgtgctgtctccggatgtgaacgagagcggcgtgctgttcacgccggtggacggt
gcgagcggcgcgggcggacatatccgcttcgggctggccgcgatcaagaacgtcggcacg
ttggccgtagagagcattctggaagcccggaaggagcgtcctttcgacagcctgctcgat
ttttgccgccgggtcgacctcagagtctgcaacaagcgcgtcgtggaatcgctgatccag
gcgggggccttcgacagcctgccgggacaccgggcgcagctgcttgccatgctggacgag
acgacggaagcggcggccaaatggcgcaaggagcgcgaggagctgcagatccagctcttc
gacgaccttgtcgaaatgccgaactgggacatccggtaccccgatgttccgaaatttacg
gcaggccaacagctggagctggaacgagagctgctgggcctgtatttgtcgggtcatccg
ctggacgactacgcggagctgctggagcaatccggtgtgcagcgcctgatggatcttggc
gaggcgccggatgagagcccggcggttacagccggcatgatcgtatccgtcaaggagatt
atgaccaaggcgggcaaagcgatggcctttgccgaatgggaggaccagatcgagcgctgc
gaggtcgtgctgttccccgaggtgtggaagcgcagccgcgcgctcgtcgacaagggcgcg
ctgcttgccctgcgcgccaaggtccagcagcaggacgaaggcttcaagctgctggccgac
gaggttgcgcagctgtcgccggacacgctgcgcgccctgctgcagcgccgcgcggccgcg
gccgcgcggccgcagggccgccccgcgccggcaggctccggcgcgccgaaagcggcggcc
gccccagccgcggccgcaggaactgccgccggcggccggggcccggccgggccgccgggc
ggcctggcgcctgccgcgcgggcaccgcggcaggctgctgcgccgccggcggcgggctcc
gccggccagcgcgcgtacatcaaaatcacggccgccgccgaggaaggcggcctcctgccg
cagctgaaggagctgctgcagaatcatcccggggctgtcccgacgctgctgttctatgag
cgggagcagaggctcatcgcgctaagcgacagctttcgggtcaagccttcaccggagctg
ttcgggcttgtcgaatcgctgctgggccctggaacaataagaataaaataa
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