Paenibacillus sabinae: PSAB_08700
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Entry
PSAB_08700 CDS
T03064
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psab
Paenibacillus sabinae
Pathway
psab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSAB_08700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psab03400
]
PSAB_08700
Enzymes [BR:
psab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PSAB_08700
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSAB_08700
DNA repair and recombination proteins [BR:
psab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSAB_08700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DZR
RNHCP
Zn_ribbon_6
HscB_4_cys
Motif
Other DBs
NCBI-ProteinID:
AHV96672
UniProt:
X4ZGZ0
LinkDB
All DBs
Position
1944074..1944910
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AA seq
278 aa
AA seq
DB search
MPELPEVETVKRTLNTLVQGKKIHKVTVRLPRIIRRPDDIRIFETLLEGHTIERVERRGK
FLRFLLDGLVLVSHLRMEGRYGLFAAGEPLDKHTHVIFYFDDGTELRYTDVRQFGTMDLF
LPGEDLELPPLNKLGLEPLSPEFTIEAFKDLAAGKNTKIKPLLLNQAYVVGIGNIYVDES
LHLAGIHPKRSAKSLSAEELSRLHQAIVSTLSEAVNAGGSSVKSYVNGQGESGSYQHQLR
IYGRKDAICYTCGSKVEKSVVGGRGTHFCPSCQPPLLT
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccggaagtagagaccgtcaagagaacactgaacaccttggtgcaagga
aaaaagatacacaaagtcaccgttcgtctgccccgcattatccggcggccggacgatatt
cgaatatttgagacgttactggaaggccatacgatcgaacgtgtggagcgccgcggcaaa
tttttgcgctttctgctggacggtctggtgctcgtctcccatctgcggatggaagggcgg
tacggattgtttgcggcgggagagcctttagataagcatacgcatgttattttttacttt
gacgatggaaccgagcttcgctatacggatgtaaggcagttcggcacgatggatcttttt
ctgcccggagaggatcttgagctccccccgctgaacaagctgggactggagccgctgagt
ccggaatttacaatcgaagcgtttaaggatctggctgccgggaaaaatacaaaaatcaag
cccctgctgctcaatcaggcatatgtggtcggcatcggcaatatttatgtggatgagtcc
ctgcatctggccggcattcatccgaagagaagcgccaaatccctctccgcagaggaactc
agtcgtcttcatcaggcgattgtctctacgctgtcggaagcggtgaatgccggcggctcc
tccgtgaagtcgtacgtgaacgggcagggcgagagcggctcgtaccagcatcagttgcgg
atatacgggcgcaaagacgccatctgctacacctgcggttcgaaggtggagaaaagcgta
gtagggggacggggcacccatttttgcccaagctgccagccgccgcttttaacttga
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