Proteiniphilum saccharofermentans: PSM36_0001
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Entry
PSM36_0001 CDS
T04672
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM36_0001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psac03019
]
PSM36_0001
03009 Ribosome biogenesis [BR:
psac03009
]
PSM36_0001
Enzymes [BR:
psac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSM36_0001
Messenger RNA biogenesis [BR:
psac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSM36_0001
Ribosome biogenesis [BR:
psac03009
]
Prokaryotic type
rRNA helicases
PSM36_0001
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
SCD18837
UniProt:
A0A1R3T2X0
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All DBs
Position
I:complement(667..2397)
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AA seq
576 aa
AA seq
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MSTFEELGVIPEIRQAITELGFENPMPVQAEVIPQLLSHKRDIIALAQTGTGKTAAFGIP
VIQKTDLSLLSPQTVILCPTRELCLQIAGDLTDFSTYVEDLKILPVYGGSSIESQIRTLK
RGVHIIVATPGRLIDLINRKTVSLKHVHTIVLDEADEMLNMGFSESIDEILSSVPESRSM
LLFSATMPKEIEKITRKYMSDPVEITIGRKNEGAQNVRHLYYMVHAKDKYLALKRIVDYY
PNIYGIVFCRTRKETQEIADKLMQDGYDADSLHGDLSQVQRDYVMTKYRNHNLQILVATD
VAARGLDVDDVTHIINFGLPDDYEVYTHRSGRTGRAGKTGTSISIIHIKEKGKIAQIEKL
INKQFEKRTIPKGDLICEKQLFNFVDKIEKVKVNEEEIDRLLPSIFRKLEWLEKEDIIKR
VVSLEFNRLIEYYRQAEEIYEPEERSSKGRREDARSERGGRRQHNGVVQPEKGYARLFIN
IGKMDGVNPATLMGFINEHVKGKVPVGRIDLMKNFSFFEIPEELAPKVVKAFKGMYIEDR
RLVVEVSRDENRPQKEKKQFFESFEGKKKKKHKQKR
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatttgaagaattgggagttattccggagatccggcaggctattacggaattg
ggatttgaaaatcctatgccggtacaggcagaagtgatcccgcaattgctttcccataag
agagacattattgccctggcacagaccggtacgggcaagacggctgcattcggcattcct
gtcattcagaaaacagatctttcactgttatcaccgcaaacggtaatcctttgccctacc
agggagttatgcctgcaaatagcaggagaccttaccgatttttccacctatgtggaagat
ttgaaaatacttcctgtatatggcggatcgagtatcgaaagccagatacggactttaaag
agaggggttcacattatcgtggcaacccccggccggcttatcgacctgattaaccgaaaa
acggtttcgttgaaacatgtacatactattgtactggatgaagccgacgagatgttgaac
atgggcttttcggaaagtattgatgagatcctttcaagtgtgcctgaaagtcgttctatg
ctgctcttctcggctacaatgccgaaggagatcgagaagatcacccgtaaatatatgagt
gatccggttgagatcaccatcggcagaaaaaatgaaggcgcccaaaacgtgaggcatctc
tattatatggtgcatgccaaagataaatatctggcgttgaaaaggattgtggattattat
cccaatatatacggaattgttttttgccgcaccagaaaagagacccaggagattgccgac
aaactcatgcaggacggatatgatgccgattcattgcatggcgacctgtcgcaggtacag
cgcgactatgtgatgactaagtacaggaaccataatcttcagatactggttgctaccgat
gtggctgcacggggattggatgtggatgatgtaacccatatcattaacttcgggttaccc
gacgattatgaagtatatactcaccgtagcggcagaaccggtcgtgccgggaagacggga
acctctatttccattatccatataaaagaaaaaggaaagatcgcgcagatcgaaaaactg
atcaataaacaatttgaaaaacggactatccccaaaggagatcttatctgtgaaaagcaa
ttgttcaattttgtggataagattgagaaagtaaaggtcaacgaagaggagatcgaccgg
ttgttaccctctattttccgtaaattggagtggcttgaaaaagaggatatcatcaaacgg
gtggtatcgcttgaattcaatcgtctgattgaatattaccgtcaggcggaggagatctat
gaaccggaagagagatcatcgaagggcaggagagaggatgcacgttcggagagagggggc
agacgccagcacaacggagtagtccagcctgagaaagggtatgcacgcctgtttatcaat
atagggaaaatggatggagtgaatcctgctacactgatgggttttatcaatgaacatgta
aaaggtaaagtgccggtaggcaggatcgacctgatgaagaatttctcctttttcgaaata
ccggaagaacttgccccgaaagtggtaaaagccttcaaggggatgtatatcgaagacagg
agactggttgttgaagtctctcgggatgaaaacagaccacaaaaggagaagaagcaattc
tttgaatctttcgaagggaagaaaaagaaaaaacataagcagaaaagataa
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