Proteiniphilum saccharofermentans: PSM36_1551
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Entry
PSM36_1551 CDS
T04672
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM36_1551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psac03021
]
PSM36_1551
03019 Messenger RNA biogenesis [BR:
psac03019
]
PSM36_1551
Transcription machinery [BR:
psac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PSM36_1551
Messenger RNA biogenesis [BR:
psac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSM36_1551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
Spore_III_AA
OB_RNB
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
SCD20371
UniProt:
A0A1R3SXY5
LinkDB
All DBs
Position
I:complement(1953002..1954960)
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AA seq
652 aa
AA seq
DB search
MAYNIIELNEKLTTELRVLAKEMGIRRPDAYKKEELIYKILDEQAIAETKKLSADGGTQQ
GYTPRRGSDSKTNTQRNKTSNRKEEPKEKETDKKEDKTKTQSQSQPVQAVEKPKLVRKES
AVTEEKVPATQKVSLSSQPETKPATTKTVPEKSIETTGTKIETPEKKAEETATPKAPGKP
IQLVFRSSKHRIEEKSTPAPVTLPPVVAEEAPEEKTDTPVKEAPVPGGKLSMMDLISPSP
LQPKQAAAQQNKQPQAHQGQVQPQVQVQAPQPKEKDPAYDFDGILNASGVLEIMPDGYGF
LRSSDYNYMSSPDDIYVSQSQIRLFGLKTGDVVEGPIRPPKEGEKFFPLVKVDNINGRNP
DDVRDRVPFDHLKPLFPNEKFNLTKGHNDNLSCRVVDLFSPIGKGQRGLIVAQPKTGKTM
LLKDIANAIADNHPEVYMIILLIDERPEEVTDMERSVNAEVIASTFDEPADRHVKIAEIV
LNKARRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFFGAARN
IEHGGSLTIIATALTETGSKMDDVIFEEFKGTGNMELQLDRKLSNKRIFPSVDIIASSTR
RDDLLLSQETLSRMWVLRNFLSDMNSVEAMEFLLTRLRRTSSNEEFLISMND
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcttataacattattgagcttaatgaaaagctcacaacagaattacgagttctcgcc
aaagagatgggaataagacgtcccgatgcatacaaaaaggaagagctcatttataaaatc
cttgatgaacaggcaattgccgaaacaaaaaaattgagcgcagacggtggaacccaacag
ggttacacaccgagaagaggttccgacagcaaaacgaacacccaaagaaataaaacttct
aacaggaaagaggaacccaaagaaaaggaaaccgataaaaaagaagacaagacaaagacc
caaagccaatcacagcctgtgcaggctgtagaaaagcctaaattagtgaggaaagagtcc
gctgttaccgaagagaaagttccggcaacacaaaaagtgtccctgagcagtcagccggaa
actaagccggcaactaccaaaacagttccggaaaaaagtattgaaacaaccggaacaaaa
atcgaaaccccggagaaaaaagctgaagaaacggctacaccaaaggcacccggaaaaccg
atacagctggtttttcgttcctcaaaacatcgtattgaggaaaagagcacacctgctcct
gtcacattaccaccggtagtggcagaggaggcaccggaagaaaaaacagacacacccgtg
aaagaggctcctgtccccggtggtaaactatccatgatggatctcatatcgccttcgcct
ttgcaacctaaacaggcggctgcacaacagaataaacaacctcaggcacatcagggccag
gtacaacctcaagttcaggtacaggctccgcaacccaaggaaaaagatcccgcttatgat
tttgacggcatactgaatgcatccggcgtattggagatcatgcctgacggttatggcttc
ctgcgctcctccgattacaactatatgtcctcgcccgatgacatttatgtatcacaatca
caaatccggctcttcggactgaagacaggtgatgtggtggaaggccctatccgtccgccc
aaagaaggagaaaaatttttcccattggtaaaagtggacaatatcaacggacgcaatcct
gatgatgtacgcgaccgtgtacctttcgatcacctgaaacctcttttccctaacgaaaaa
ttcaacctcaccaaaggacataacgacaatctttcctgtcgtgtggttgacctcttctct
cctatcggaaaaggacagcgcggtctgatcgtagcacaacccaaaacagggaagacaatg
ctgttgaaggatattgccaacgctattgccgacaatcatccggaagtatatatgatcata
ctgctgattgacgaacgccctgaagaggtgactgacatggaaaggagcgtaaatgcagaa
gtaatcgcttctactttcgatgaaccggcagaccgtcacgtgaagattgccgaaattgta
ctgaacaaggcccgcaggctggtggaatgcggacacgatgtagtgatactgctcgactcc
attacccgcctggctcgtgcatataatacggtacaacctgcttcgggaaaggtgctttcg
ggaggtgtggacgccaatgcgttgcataaaccaaaacggttctttggtgcagcccgtaac
atcgaacatggcggttcacttaccattatcgcaacagcgctcaccgaaaccggctccaaa
atggacgacgtgatcttcgaagagttcaagggtaccggcaacatggaattgcaactcgac
cgcaaactctccaacaaacggatattcccctctgtggatattattgcatcgagcacgcgt
cgtgacgacctgctcctgtcgcaggaaacgcttagccgcatgtgggtactccgcaacttc
ctttcggatatgaattcggtggaagcgatggaattcctgttgacccgtctgagacgtact
tcaagcaatgaagaattccttatttcaatgaatgattga
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