Proteiniphilum saccharofermentans: PSM36_1999
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Entry
PSM36_1999 CDS
T04672
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac02020
Two-component system
psac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSM36_1999
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSM36_1999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psac03021
]
PSM36_1999
Transcription machinery [BR:
psac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSM36_1999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
DUF816
HTH_21
SF3b1
Motif
Other DBs
NCBI-ProteinID:
SCD20806
UniProt:
A0A1R3SX08
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All DBs
Position
I:2484686..2486137
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AA seq
483 aa
AA seq
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MALKQQQELKQTQRLSPLQMQVIKLVELNSVEVEDRIKQEIEDNPALEVSDSGPAGEEEE
NNDVPEDILSQEEIILGDYASEDDIPDYRLNGSDRKNETNIVEISYYDDKSLSDSLQEQI
GLLQLDDQRQLIAEYIIGNLDESGYLQRDLQSISDDLLFQQQIEVSPLQMEDVLYEIQDL
EPAGVGARNLRECLLLQLGRYASTPAVEHAKVILSDYFDEFSRKHYEKIIRQMNITQDEL
RDAIHEIVSLNPKPGNALGGTLQTAMNNITPDFIVDSYNGEVSIQLNNSNVPSLQINRSF
SEMLKGYNENKESMSNDDKQAILFMKQKVDSAKWFIDAVKQRQNTLQRTMEAIVNLQYDF
FLTEDETQLKPMILKDVAERTGFDISTVSRVSNSKYVQTNTGIYPLKFFFSEAMQTNTGE
DISSREVKLILKESIDNENPVKPLTDDQLTKILNEKGYVIARRTVAKYREQLNIPVARLR
KKI
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctctgaaacaacaacaggaactaaaacaaactcaacgtctttcgcctctgcaaatg
caggtaataaaactggtagaactcaattcggtagaggtggaagaccgcatcaaacaggag
atagaagataatcccgccctggaagtctcggattccggccctgcgggcgaagaagaggag
aacaacgatgtcccggaagatattctctcacaggaagagatcattcttggggattatgct
tcagaagatgatataccggactatcggctgaatggaagcgaccggaagaatgaaaccaat
atagtcgagatcagttattacgacgacaagtcattgagtgactcattgcaggaacagatc
ggattattacaactggatgaccaaaggcaattgatcgctgagtatattattggtaatctc
gatgagagcggatatctgcaacgcgaccttcaatcgatctctgacgacctgctgtttcaa
caacagatagaggtatctcccctgcaaatggaagatgtcctgtatgaaattcaggatctg
gaaccggccggtgtgggagcccggaatctccgggaatgtctcctgcttcaattaggccgg
tatgcatccacgccggcggtggaacatgccaaagtgattctttcggattatttcgatgaa
ttttcaagaaaacattacgaaaaaatcatccgccagatgaatatcacccaggatgagcta
cgcgatgccatacatgagatcgtctctttgaatccgaaaccgggcaacgcgttgggcggc
acactgcagaccgccatgaacaatatcactcccgattttatcgtagactcatacaatggt
gaggtctccatccaactcaacaacagtaatgtccccagcctacagataaaccgctctttt
tcggagatgctcaagggatacaacgaaaacaaggagagcatgtcgaacgacgataaacaa
gcgattctctttatgaaacagaaggtggactctgccaaatggttcatcgacgcagtaaaa
caacgccagaacaccctgcaacgcaccatggaggcgattgtgaacttacagtatgatttt
ttcctgacagaggatgagacccagctcaaacccatgatcctgaaagacgtggcagaaaga
acaggattcgatatctcaactgtttccagggtaagtaatagtaagtatgtacagaccaac
actggtatttacccgctcaaatttttcttctcggaagctatgcagaccaataccggagaa
gatatctcttcaagggaggtcaaattgatcctcaaggaaagtatcgacaatgaaaatcct
gtcaaacctcttactgacgaccaacttacaaagattctcaatgaaaaaggatatgtgatt
gcgcgccggacggtggctaaatatcgcgaacaattgaatattcctgtggctcgattgaga
aaaaaaatataa
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