Proteiniphilum saccharofermentans: PSM36_2530
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Entry
PSM36_2530 CDS
T04672
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM36_2530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psac03019
]
PSM36_2530
03016 Transfer RNA biogenesis [BR:
psac03016
]
PSM36_2530
Enzymes [BR:
psac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSM36_2530
Messenger RNA biogenesis [BR:
psac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSM36_2530
Transfer RNA biogenesis [BR:
psac03016
]
Prokaryotic type
tRNA degradation factors
PSM36_2530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
SCD21331
UniProt:
A0A1R3T0R3
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All DBs
Position
I:complement(3172639..3174783)
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AA seq
714 aa
AA seq
DB search
MSKKTTPIPSVNKPKKKELIPLVTNFLSRNNDKQFNYKQIAAALDIRGEEGRRVLISVLD
KLRDEDVLLETSRGRYRINNRGLMLEGRFERRSNGKNFFVPDDDGNIIYIPERNSKHAMN
GDRVRVQLLAKRKRADTEGTVVDILERAQSRFVGILEVQKHFAFLVMDSKFLSNDIFIPK
EELNGAQNGDKVLVEITEWPAKANNPVGKVIDVLGKPGHNDTEMHAILAQYDLPYSYPEK
VEKFADLIPEGVDKEEIAKREDFRDVFTITIDPKDAKDFDDALSLRQLSSNQWEVGVHIA
DVTHYVKPGDLIDREAENRATSIYLVDRTIPMLPERLSNGICSLRPYEEKLCFSVIFTLN
DKAEIKKSRIVRTVIKSDSRLTYEDAQAVIETGKGDFSSEILQLHHLARQLRERRFANGA
INFERYEVKFNLDEKGKPLGVYFKESKEANHLIEEFMLLANKNVAESIGIVPKGKKPKTF
VYRIHDVPDPEKLDTFNTFILRFGHKIKPDGSKVEVAKSINSLLDKVQGRPEENLIETIA
IRTMSKAVYSTRNVGHYGLAFDYYTHFTSPIRRYPDMLVHRLLERYLEGGQSVDQGSLEE
ECKHCSQMEQVAANAERDSIKYKQVEFMADKIGKVYDGVVSGVTEWGIYVEINENKCEGM
IPIRELDDDFYELDEKNFRLVGRRTRREYRLGQPVSIQVARANLDRKQLDFTLA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaaacaacacctataccttccgtaaataaacccaaaaaaaaggagttgatc
cctttagtaaccaattttctttcccggaataatgataagcaattcaattataagcagata
gcagctgcgctggatattcgtggagaagagggacgacgtgtactgatcagtgtgctcgac
aagctgcgcgatgaagatgtgcttttagagacatcccgcggcagataccgtatcaacaac
aggggattgatgctggaaggccgttttgaacgacggagcaatggcaaaaacttttttgtg
cctgacgatgacggaaatattatttatatacccgaacggaacagtaagcatgccatgaac
ggagacagggttcgtgtccaactgttggcaaagcggaaacgggctgataccgaaggaacg
gttgtagatatactggaacgtgcccaaagccgtttcgtgggaatactggaggtgcagaaa
cactttgccttcctggtgatggatagtaagttcctttcgaatgatatctttattccgaaa
gaagaactcaatggtgcccaaaatggagacaaagtgttggtggaaattaccgaatggcct
gcaaaagccaataatcccgtaggaaaagtgattgatgtgctgggcaagccgggacacaat
gataccgagatgcatgccattcttgcccaatatgatctgccttacagctatccggagaaa
gtggagaaatttgccgacctgatccctgagggagtcgataaagaagagattgccaaacgg
gaagacttccgtgatgtattcactattaccatcgacccgaaagatgccaaagatttcgac
gatgccctttccctgcgtcaactctcatccaatcaatgggaggtgggagtacatattgcc
gatgtgacccactatgtgaaaccgggagacctgatcgaccgggaggcggaaaacagggcg
acctccatttaccttgtcgacaggaccatccccatgctgccagaacggttgagcaacggg
atatgttcgttacgcccttatgaagagaaactctgtttctcggtgatctttacgctgaat
gataaagcagagataaaaaaatcgcgtattgtaagaaccgtgataaagtcggacagccgg
ctgacctacgaagatgcacaggcggtgatcgaaaccggaaagggcgacttttcctctgag
atactgcaattgcaccatcttgccaggcaattgcgagagaggcggtttgccaatggtgcc
attaattttgaacggtatgaggtgaaattcaatctcgatgagaaaggaaagccgttggga
gtctatttcaaggagtcaaaggaagccaaccatctgatcgaagagtttatgttgctggct
aataaaaacgtggccgaatctatcggcatagtacccaaagggaagaaacccaaaactttt
gtctatcgcatacacgatgtccctgatccggaaaaactggatacattcaatacattcatc
ctgcgattcgggcacaagataaaacccgacggctcgaaagtggaagtggcgaagagtatc
aactccctgttggataaggtgcagggacgcccagaggagaacctgattgagactatcgca
atccgtactatgtccaaagcggtctattccaccaggaatgtaggacattacggtctggcg
ttcgattattatacccattttacttctcccatccggaggtatcctgatatgctggtgcac
cgtctgctggaacgctatctggagggagggcaaagtgtagaccagggatccctggaagag
gaatgcaagcactgttcccaaatggagcaggtagctgctaacgccgaacgggattctatc
aaatacaagcaggtggaattcatggccgataagatcggtaaagtctatgatggcgtagtc
tccggtgtgacggaatgggggatttatgtggagatcaatgagaataagtgtgaaggtatg
atccctatccgcgagttggatgatgatttctacgaactggatgaaaagaatttccggtta
gtcggccggcgtaccagaagagagtatcgtcttggccagcctgtttccattcaggtggca
agagccaatctcgacaggaaacaacttgattttacgcttgcctaa
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