Proteiniphilum saccharofermentans: PSM36_2951
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Entry
PSM36_2951 CDS
T04672
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psac
Proteiniphilum saccharofermentans
Pathway
psac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSM36_2951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psac03400
]
PSM36_2951
Enzymes [BR:
psac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSM36_2951
DNA repair and recombination proteins [BR:
psac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSM36_2951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_16
KOW2_Spt5
VWD
Motif
Other DBs
NCBI-ProteinID:
SCD21740
UniProt:
A0A1R3T3H8
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All DBs
Position
I:complement(3707118..3710465)
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AA seq
1115 aa
AA seq
DB search
MVETIDIGQLQQVIGKHPNLAAAGSLLKEIQVLSVTGLHGSSRALFAGELFHKQPQTYLY
ILNDAETAGYFYHDLTQMMGSVDVLFFPSAYKRAAKYGQIDRANEVLRAGVLSRLQDGSG
PLIIVSYPDALAEKTVSRKQLVENTLKVSIGDRVDSAFVSEVLDSQGFLITDYVYEPGQY
AVRGSILDVFSFSSEYPYRIDFFGDEVETIRNFDVETQLSKEKFNEIRIVPEFGRADSKG
ASLFSLLPAGSVIGTEDMRWIASRVESINEDKLHIDPKDEEFVKAELLLKKDFLESIRPF
RQIRFDTKMLDTPDAGIEFNTSMQPPYHKNFDLLGESLHRFMDEGYTIYILSDSEKQQKR
LFHIFEDRNDPIPFIPVNKTLHEGFSDDTLKICCFTDHQIFDRFHKYNLKSDKARSGKIA
LTLKEINQLQQGDYVVHMDHGIGRFSGLVRLRIGDKVQEVIKLLYKNNDAVFVSIHSLHK
ISKYKGKEGEEPQLNKLGSGAWERVKERTKKKIKDIARDLIKLYAQRQQEKGFAFSKDTY
LQTELEASFMYEDTPDQVKATRDVKADMQSGRPMDRLVCGDVGFGKTEIAIRAAFKAATD
GKQTAVLVPTTVLATQHYHTFSERLADFPVKVDYLSRARSAKEQKEILLRLKEGKIDILI
GTHRLVGKDVEFKDLGLLIIDEEQKFGVSVKEKLKQLKVNVDTLTMTATPIPRTLQFSLM
GSRDLSTIGTPPPNRYPIQTEVHTFDMELVRDAVNFELNRNGQLFIVNNRIKNIYELEAL
IKREMPGVRVAVGHGQMDPKKLESVIADFINHEQDVLIATTIIESGIDMPNVNTIIVMDA
QNFGLSDLHQLRGRVGRSNRKAFCYLLAPPFYMLSSDSRRRLQAIENFAELGSGLHIAMQ
DLDIRGAGNLLGAEQSGFIADLGYETYQKILAEAVQELRKDEFAELYDTQHERAEAYDFV
DDVLVESDLELMFPVDYIPNDAERVGIYREMDNIESETEIMDFMKRLEDRFGRIPAQGRE
LIRIVRLRRIAKSLGIEKVVLKNGQMTLFLISNPESPYYSSPVFDQLLDFVQKHPRRCRL
QEKGNKRSVAISHVETVETSVALLEGIGKEETMPV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaacaattgacattggccaattacaacaggtgattggaaagcatcccaacctg
gcggctgcaggctcactgctgaaagagatccaagtcttatcagtgacgggtttgcacggc
tcttcccgtgctttatttgcaggggaattattccacaaacaaccacagacttacctttat
attttaaatgacgcggagaccgcaggctatttctatcatgacctgacccaaatgatgggt
tcggttgatgtgctctttttcccttcggcctacaagcgggcagctaagtacgggcagata
gaccgtgctaacgaggtacttcgtgcaggtgttttaagccgcctgcaggatggttccggc
ccattgatcattgtcagttatcctgacgcattggcagagaaaaccgtttcccgtaaacaa
ctggtggaaaatacgctgaaagtgtcgataggagaccgggtcgacagtgctttcgtgagt
gaagtgctggatagccagggtttcctgatcaccgattacgtgtatgagccgggacagtat
gccgtgcggggtagtatcctcgatgtcttctctttttcaagtgaatacccttatcgtatc
gatttcttcggggatgaggtggagaccattcgtaacttcgatgttgaaacacagctttcg
aaagagaaattcaatgagattcgtattgttcctgaattcgggcgtgctgattctaaaggg
gcgtcgctgtttagccttcttcccgccgggtcggtgatcggcacggaagatatgcgctgg
attgcaagccgggtagaatcgatcaacgaagataaactgcacatagatcccaaggatgag
gaatttgtgaaagcagaactgctcttgaaaaaggattttctggagagtatccgcccgttc
cggcagatacgtttcgataccaagatgttagatacccccgatgccggtatcgaattcaat
acatcaatgcagcctccctatcacaagaatttcgatttgctgggcgaatcgttgcaccgt
tttatggatgagggatatacaatttatattttgagcgacagtgagaagcaacagaagagg
cttttccatattttcgaggatcgtaatgatcccatcccttttataccggtcaacaaaacg
ttgcatgaaggattttctgatgatacattaaaaatatgttgctttaccgatcatcagatt
ttcgaccgctttcataaatataacctcaagtccgacaaggctcgttcaggcaagatcgcc
ctgactcttaaggagatcaaccaacttcaacagggtgattacgtggtgcatatggaccat
ggtatcggccggttttccgggctggtacgccttcgcatcggcgacaaggtacaagaggtt
atcaaacttctctataagaataatgacgcggtattcgtttccattcattccctgcataag
atatcgaagtacaaaggtaaggagggagaggagccgcaactgaataaactgggctccgga
gcatgggagcgggtgaaagagaggactaaaaagaagatcaaagatattgcccgcgacctg
atcaaactgtatgcccaacgtcaacaggagaaggggtttgctttttcgaaagatacttac
ctgcagacagagttggaagcatcgtttatgtatgaagatacgcccgaccaggtaaaagca
acccgcgacgtgaaagccgatatgcagagcgggcgacctatggacaggctggtctgtgga
gatgtaggtttcggtaagaccgaaatagctatccgtgctgcctttaaagcggcaaccgac
gggaaacagacggctgtgttggtgccaaccacggtgttggcaacccagcattaccatact
ttcagcgaacggctagccgatttcccggtgaaggtggattacctgagccgcgcccgttcg
gcgaaagagcaaaaagaaatcctcctccggttaaaggagggaaagatcgatatccttatc
ggtacgcaccgcttggtaggaaaagatgtggaatttaaagacctggggttgctgatcatc
gacgaggaacagaaattcggagtatccgtcaaagaaaagctcaagcaattgaaggtgaat
gtagatacgctcaccatgacggctacgcccatcccccgtacgctgcaattctcactgatg
ggatcacgcgacctctctaccatcggaacaccccctcctaaccgttaccccatacagacg
gaggtacatacgttcgatatggaacttgtccgtgatgctgtcaattttgagttgaaccgg
aatggacagctgtttatcgtgaataaccgcatcaaaaatatttatgaactggaggccctg
atcaaaagggagatgccgggcgtccgtgtagcagtgggccatggacagatggatccgaag
aaactggaaagtgttattgccgatttcatcaaccatgaacaggatgtgctgatcgctacc
actatcatagaatcgggtatcgatatgcccaacgtgaatacaattatagtgatggatgcc
caaaattttggactgagtgacctgcaccagttgcgtggcagggtgggacgaagtaaccgt
aaggcattctgttatctgctggcgccgccgttttatatgttaagcagtgattcgcggaga
cgtttgcaggcaattgaaaattttgcggaattgggcagtggtctccatatcgccatgcag
gatttggatatccgtggtgccgggaaccttttgggagccgagcagagcggatttattgcc
gacctgggatatgaaacataccagaaaatactggcagaagctgtacaagaattgcgaaaa
gacgaatttgcagaactgtacgatacacagcatgagagggcagaggcgtatgatttcgtg
gatgacgtgttggtggagagcgatctggagttgatgttcccggtggactatattccgaac
gatgcggaacgtgtgggcatctatcgtgaaatggataatatcgagtccgaaacggagatc
atggactttatgaaacgactcgaagaccgcttcggaagaattccggcacagggcagggag
cttatacgtattgtccggcttcgccgtattgccaagtcattgggtatagagaaggtggtg
ctgaaaaacggacagatgaccctcttcctgatctctaatcccgaatcgccctattacagt
tcgccggtattcgaccagttgttggatttcgtacagaaacacccacgccgttgccgttta
caggaaaaaggcaataagcggtcggtggcgatcagccatgttgaaacggtggagacatct
gtcgctttgttggaagggatcggaaaagaagaaacgatgccggtttag
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