Pseudoalteromonas sp. APM04: MTP24_15310
Help
Entry
MTP24_15310 CDS
T11363
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psad Pseudoalteromonas sp. APM04
Pathway
psad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP24_15310 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psad03021
]
MTP24_15310 (rho)
03019 Messenger RNA biogenesis [BR:
psad03019
]
MTP24_15310 (rho)
Transcription machinery [BR:
psad03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MTP24_15310 (rho)
Messenger RNA biogenesis [BR:
psad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MTP24_15310 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
AAA
OB_RNB
Fungal_virus_P2_C
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UOB73446
LinkDB
All DBs
Position
APM04_1:3310301..3311560
Genome browser
AA seq
419 aa
AA seq
DB search
MHLRELKDKSIKELVNLAESMGLENVARLRKQDIIFTILKSHAKGGENIFGGGVLEILQD
GFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVN
FDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVLDLASPIGRGQRGLLVAPP
KAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAERRVFPAIDF
NRSGTRREELLTKPDELQKLWILRKIVHEMSEIDAMEFLIDKLSMSKTNDEFFDSMKRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatttacgcgaattaaaagacaagtctataaaagaacttgtaaacttagctgagtcc
atggggctcgaaaacgtagcccgcttaagaaagcaagatatcatttttaccatattaaaa
tcccatgccaaaggcggagaaaatatcttcggcggtggtgtccttgagattttgcaagat
ggttttggctttttaagatcatcagaagcttcttacttagctggcccagatgacatttat
gtatcaccgagccaaattcgccgcttcagtatgcgtactggcgactcaatttcaggcctt
attcgtccaccaaaagatggtgaacgttactttgcattacttaaagtaaacgaagttaac
tttgataaacctgaaaattctcgcaccaaaattctttttgaaaacttaacgccactgcat
gcaaacgaacgtttccgcatggaacgtggtaacggtagtaaagaagatatcactgctcgt
gtacttgatttagcatcaccaattggccgtggccaacgtggtttattagtagcaccgcca
aaagcgggtaaaacaatgctactgcaaaacattgcacaatcaattacgcataatcatcct
gatgtaacgttaatggttttactaattgacgaacgtcctgaggaagtaactgaaatgcaa
cgccttgttaaaggtgaagttattgcatcaacgtttgatgagcctgcatctcgtcacgta
caagttgccgaaatggttatcgaaaaagcaaaacgtttagttgagcataaaaaagacgtt
gttattttacttgattcaatcacgcgtttagcacgtgcttacaacaccgttattccttca
tcaggtaaagtacttaccggtggtgttgacgctaatgcactacacaaacctaagcgtttc
ttcggtgccgcacgtaacgttgaagaaggtggtagcttaacaattatagccactgcactt
atcgatactggctctaaaatggatgaagttatctacgaagaatttaaaggtactggtaac
atggaattacatctaaaccgcaaaattgcggaaagacgtgtattcccagctatcgacttt
aaccgctctggtactcgccgtgaagaactacttactaagccagatgagctgcaaaagcta
tggattttacgtaaaatcgttcatgaaatgtcagagattgacgccatggaatttttaatc
gataaactatcaatgagtaaaaccaatgatgagttttttgattcgatgaaacgccaataa
DBGET
integrated database retrieval system
