Candidatus Phytoplasma sacchari: O7R10_00055
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Entry
O7R10_00055 CDS
T09130
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psah
Candidatus Phytoplasma sacchari
Pathway
psah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O7R10_00055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psah03019
]
O7R10_00055
03009 Ribosome biogenesis [BR:
psah03009
]
O7R10_00055
Enzymes [BR:
psah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O7R10_00055
Messenger RNA biogenesis [BR:
psah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O7R10_00055
Ribosome biogenesis [BR:
psah03009
]
Prokaryotic type
rRNA helicases
O7R10_00055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBL31451
LinkDB
All DBs
Position
14031..15692
Genome browser
AA seq
553 aa
AA seq
DB search
MSILFEELNLLKQTKDALKDLEFSHPTPIQNLVIPEMIKGNDIIAQSQTGTGKTFSFSIP
IIEKIDPKIDKTQSLVLCPTRELSIQVFDEMKKLLKFHKEIKITVICGGESYTKQFKDLE
NNPHIIIATPGRIIDLLEKKKVNLSKIKILTLDEADEMLKMGFQEALETILKNIPEKRQT
VLFSATLPLTIKKIASKYQKNPKILKIKQENIAVKSIKQFYFVVKEFNKNKLLVRLLDQK
NPESVIIFANTKKDVDNIFNYLQNENFLVNAIHGDLKQNQRKYVMDNFRKKNIKILVATD
VAARGLDISDIKMIINYDLPYEDEVYVHRIGRTGRAGKTGLAYSFISYMKINKLKKLENY
LKEKITFLNIPTVQEIQKEQSIQFNQKINELIENNKITVNEENKILIDQLMKKFDVRQII
NSFLQYFKPEKKNYEPIDENKFNFYQQKENNNNNNLNRFQNNKIKNYKEIVRKKRENMTE
LVINLGKNDGINNPLLLLKIFDEKFNIYKRNIGNIKHFYDKTIFEISNNLADKIKSKKNI
YFENKLLQITKSK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtattttattcgaagaattaaatttattaaaacaaacaaaagacgctttgaaagat
ttggaatttagtcatcctacacctattcaaaatctagtaatacctgaaatgataaaaggg
aatgatataatagctcaatctcaaacaggaacaggaaaaactttttccttcagtatcccg
attattgaaaaaatagacccaaaaattgacaaaacacaatctctagttttatgtccaaca
agagaattatcaattcaagtatttgatgaaatgaaaaaattacttaaatttcataaagaa
ataaaaataacagtaatttgtggtggagaatcatacacaaaacaatttaaagatctagag
aataatccccatattatcattgctactcctggaagaattatagatttactagaaaagaaa
aaagtaaatttatcaaaaattaaaattttaacattagatgaagctgatgaaatgctaaaa
atggggtttcaagaagccttagaaactatattaaaaaatattccggaaaaaagacaaaca
gtattgttttcagctactctaccattgacaatcaaaaaaatagcttctaaatatcaaaaa
aatcctaaaattttaaaaattaaacaagaaaatatagctgttaaatcaataaaacaattt
tatttcgtagtaaaagaatttaataaaaataaacttctagttaggcttttggatcaaaaa
aacccagaatcagttattatattcgctaatactaaaaaagatgtagataatatttttaat
tatctacaaaatgaaaactttttagtaaatgctattcacggagatttaaaacaaaatcaa
agaaaatatgttatggataattttagaaaaaaaaatatcaaaatattagtagctacagat
gttgcagcaagaggtttagatatttcagatattaaaatgattattaattatgatttacca
tatgaagacgaagtttatgttcatagaataggtagaacaggaagagctggtaaaactggt
ctagcatatagtttcataagttatatgaaaataaataaattaaaaaaacttgaaaattat
ttaaaagaaaaaataacatttttgaatataccaactgttcaagaaatacaaaaagaacaa
agtattcaatttaaccaaaaaataaatgaattgatagaaaataacaaaataacagtaaat
gaagaaaataaaattttgatagatcagctaatgaaaaaatttgatgtaagacaaattatt
aatagttttttacaatattttaaacctgaaaagaaaaactatgaaccaattgatgaaaat
aaattcaatttttatcagcaaaaagaaaataataataacaataatttaaacagatttcaa
aataataaaattaaaaattataaagaaattgttagaaaaaaaagagaaaatatgacagaa
ctcgttattaatttaggtaaaaatgatggtataaataatcctttattgcttttgaaaatt
tttgatgaaaaatttaatatttacaaaagaaacataggtaatattaaacatttttatgat
aaaaccatatttgaaatctcaaataatttagcagataaaataaaatctaaaaaaaatatt
tattttgaaaataaacttttacaaataacgaaatcaaaataa
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