Pontimonas salivibrio: C3B54_11301
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Entry
C3B54_11301 CDS
T05334
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psai
Pontimonas salivibrio
Pathway
psai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3B54_11301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psai03021
]
C3B54_11301
03400 DNA repair and recombination proteins [BR:
psai03400
]
C3B54_11301
Enzymes [BR:
psai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3B54_11301
Transcription machinery [BR:
psai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3B54_11301
DNA repair and recombination proteins [BR:
psai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3B54_11301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TH1
5_nucleotid
Motif
Other DBs
NCBI-ProteinID:
AVG23299
UniProt:
A0A2L2BNP7
LinkDB
All DBs
Position
280402..284289
Genome browser
AA seq
1295 aa
AA seq
DB search
MLEATTFDEIRIGLATSENIRGWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIRVDTDARHREKPELEKELRQEIGVLEKERDAALAERMTELEQE
LAELEAAAAKADQKRRADDAGKKELASIRKSYDDDIAHLERVWEEFISLQVGDLKAEDAI
FQDVQDRYGMFFDSHMGAEAIQRRLEDFDLQAEADILHDEIQNGKGQRKIRAIKRLKVVN
SFLQTGASPASMVLEVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTNNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLRLHQCGLPKLMALELFKPFVIKRLMDIGHSSNIKNAKRMVERSR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTVPTQDMIIGLHHLTSVRKEAAGEGR
MFSSVAEAIMAMDRGELHLNSVVKIRIENVHLSPRKQPEGFVQGSTMIRETTLGRALFNE
LLPEDYYWVEAVIDKSRVSELVNDLAERYPKVVVADTLDKIKDAGFHWATRSGVTVALSD
VPRPPQKDAIVAKYEKQAAKVDAQFEKGLISDQERRRELVELWSAGTKEVNDAMREVFEE
GNTINRMVTSGARGNWLQVGNIAGMRGLVSNPRGEVIARPIISSYREGLSVAEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTTKGITFPIAHQDSEGSWVRSDN
VENEVFARNLAQDAVDAKGTVVAQAGADVGDVLIDELVTAGVHEISVRSVLVCESHVGVC
AACYGRSLASGTAVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVAE
LFEARTPKGASPIAEADGRISIEETDTQYKITLTPDNGDEEVLHTVSKRMSLLVADGDHV
ELGAQLHEGPVDPKEVLRVKGVRAVQEHLVGGVQGVYGSQGVPIHDKHIEVIVRQMLRKV
TVVDHGETRLLPGELVDRTRYNQINRESLTEGKKTASARQEVMGITKASLATESWLSAAS
FQETTRVLTEAAMQGKRDPLVGLKENVIIGKLIPAGTGLSRYRNIQVEPTEEARAEHYPA
RLFSEDDAFGSADDLSFVDFEAFSTEDGTQKDNYS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaagcaaccacgtttgacgaaatccgcatcggtttggccacctcggagaacatc
cgcggctggtcctacggtgaggtgaaaaagcccgaaaccatcaactaccggacgctgaag
ccggaaaaggatggtctcttcggtgaacagattttcggcccctcgcgggactgggagtgt
gcctgtggcaagtacaagcgcgtccggttcaaaggaatcgtctgtgagcgctgtggcgta
gaggtcaccaagtcctcggtgcgtcgtgagcgcatgggccacatcgaactggctgcccct
gtgacccacatttggtacttcaagggtgtgcccagccgtttgggttacctgctcgacatg
gcaccgaaagaccttgagaaggtcatttatttcgccgcgtacatgatcattcgggtggac
actgacgcccgtcaccgcgaaaagcccgaactggaaaaagaactccgccaagaaattggt
gtgctcgaaaaagagcgcgacgcagcactcgctgagcgcatgaccgagctggaacaggaa
ctggctgaactggaagccgcggcggcaaaagccgaccagaagcgccgtgccgacgatgcc
gggaagaaagagctggcgtcaatccgcaaaagctacgacgacgacatcgcacacctcgag
cgggtgtgggaagagttcatcagcttgcaggtcggtgacctgaaagctgaagacgccatc
ttccaggacgtccaggaccgctacggaatgttcttcgactcccacatgggtgccgaagcc
atccagcgtcgcctcgaagacttcgaccttcaggccgaggccgacattctgcacgacgaa
atccaaaacggtaaaggccagcgcaagatccgtgcgattaagcgcctgaaggtcgtgaac
tccttcctccaaacgggtgcctcaccggcatccatggtgttggaagttgtcccggtgatc
ccaccggagcttcgccccatggtgcagctggacggtggtcgctttgcgaccagcgatctc
aacgacctgtaccgccgcgtgattaaccgcaacaaccgtctgcgtcgtctgcttgacctc
ggtgcacccgagatcatcgtgaacaacgaaaagcggatgctgcaggaagccgttgacgcc
ctgttcgacaacggtcgtcgtggtcgtcccgtcacgggaaccaacaatcgtgccctgaag
agcctctccgacatgctgaagggcaagcagggtcgtttccgccaaaacctgttgggtaag
cgcgtggactactcgggccgttcggtcattgtggtcggtccgcagctgagactgcaccag
tgtggtttgcccaaactgatggcgttggagctgttcaagcctttcgtgatcaagcgcctg
atggacattgggcactccagcaacatcaaaaacgccaagcgcatggtggagcgctcacgc
cccgaggtctgggacgtgttggaagagatcattcgtgagcggcccgtgttgctgaaccgc
gcccccacgcttcaccgcctgggtattcaagcgtttgagccacaactggtcgagggtaaa
gcgattcagcttcaccccttggtctgtgcggcgttcaacgctgacttcgacggtgaccag
atggctgttcaccttccactctccgtggaagcgcaagcagaagcccgcgtgttgatgctg
gcctcgaacaacatcctgaagccctccgacggtcgccccgtcaccgtgcccacccaggac
atgatcattggtctgcaccacttgacctcggtgcgcaaagaggccgcgggcgaaggccgc
atgttctcgtcggtcgctgaagccatcatggcgatggaccggggcgagcttcacctgaac
tctgtggtgaaaattcgtatcgagaacgttcacctctcgccgcggaagcagccagaagga
ttcgtccaaggttcgaccatgattcgggaaaccactctcggtcgtgcactgttcaacgaa
cttcttcccgaggactactactgggtggaagccgtcattgacaagtcgcgggtatccgag
ttggtcaacgacttggctgagcgctaccccaaagtggttgtggcggacaccctggacaag
atcaaagacgccggcttccactgggccactcgctccggtgtgaccgtcgcgttgagcgat
gtcccgcgtcctccgcagaaggacgccattgttgccaagtatgaaaagcaggcggcaaag
gtcgacgcacagtttgaaaagggtctgatttctgaccaggagcgtcgtcgtgaactcgtg
gaactctggagtgcgggcaccaaagaagtgaacgatgcgatgcgtgaggtcttcgaagag
ggcaacacgattaaccgcatggtgacttctggtgctcgtggtaactggctgcaggtggga
aacatcgccggtatgcgtggactggtgtccaacccccgtggtgaggtcattgcccgtccg
attatttccagctaccgcgaaggcctcagtgtggccgagtacttcatcgcgacacacggt
gcgagaaagggtcttgccgacaccgctcttcgtactgctgactccggttacctgacccgt
cgactcgtcgacgtgtcgcaggatgtcatcattcgcgaagaagactgtggcaccaccaag
ggcattacgttccccatcgctcaccaagacagcgaaggtagctgggtgcgctcggacaac
gtcgaaaacgaagtgttcgccaggaacctcgctcaggacgccgtcgatgccaaaggcacc
gtcgtcgcacaagcgggtgccgacgtgggcgatgtgctcatcgacgaactggtcacagcc
ggtgtgcacgagatttcggtgcgctctgtattggtctgtgaatcgcacgtcggtgtgtgc
gcggcctgctacggtcgctcgctcgccagtggtaccgcggttgacctcggtgaagcggtc
ggaattatcgccgcccagtcgattggtgaaccgggaacccagctcaccatgcgtaccttc
cacaccggtggttccgcttctgccgacgacatcacccagggtcttccccgggtggcggag
ttgtttgaagcgcgtacccccaagggtgcaagccccattgcggaagctgatggccggatc
tccattgaagagactgacacccagtacaagatcaccctcactccggataacggcgacgaa
gaggtcttgcacactgtctcgaagcgcatgagcttgctggttgccgacggcgaccacgtg
gaactgggtgctcaactgcacgaaggccctgtcgacccgaaggaagttcttcgggttaag
ggtgtccgcgcggtgcaggagcacttggtcggcggagttcagggtgtgtatgggtcccag
ggtgtgccgatccacgacaagcacattgaggtcatcgtgcgccaaatgctgcgcaaggtc
accgttgtggatcacggtgaaacgaggctgttgcccggtgaactggtggatcgcacccga
tacaaccaaatcaaccgtgagtcactgaccgaaggcaagaagactgcctccgcgcgtcag
gaagtcatgggaatcaccaaagcgtcactggcaaccgaatcgtggctttccgcggcctcc
ttccaggagaccacacgggtcctcaccgaagcggccatgcaaggaaagcgcgatccgcta
gtgggcctcaaagagaacgtcatcatcggaaagctcattcctgccggaacgggactgtcg
cgctaccgcaacattcaggtggagcccaccgaagaagccagggcggagcactaccccgcg
cgcctcttcagcgaagacgacgcgttcggatcggcagacgacttgtcgtttgttgacttc
gaagcgtttagcaccgaagacggaactcagaaagacaactacagctaa
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