Pontimonas salivibrio: C3B54_11584
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Entry
C3B54_11584 CDS
T05334
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psai
Pontimonas salivibrio
Pathway
psai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C3B54_11584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psai03400
]
C3B54_11584
Enzymes [BR:
psai01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C3B54_11584
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C3B54_11584
DNA repair and recombination proteins [BR:
psai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C3B54_11584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
UPF0175
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AVG23570
UniProt:
A0A2L2BPH1
LinkDB
All DBs
Position
547713..548666
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AA seq
317 aa
AA seq
DB search
MPELPEVEVVRRGIEPYSTGWQIEDVRVFDPRALKRHDGPAEDFTHRLVGRTLRGAIRRG
KFLWLPLSDPSSPDRPGDEAVVCHLGMSGQVLLGEHPDQFGALLRVSLELRSPSGQSITW
GFVDQRLFGSLAIDRLVEATDGKSPSTGTPVPAGCGGEDSRLPSQVHHIGRDLLDPAVDD
VVLARAIRKKSSGIKRVLLDQRLTSGVGNIYADEALYRSRLHYDYPASRLSHAKAVELLG
HVRKVFQDALAEGGTSFDWQYVNVNGQSGYFSQSLSAYGQDGTPCGRCGRTIVREPFMNR
SSFRCPRCQPTPRKRVG
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacccgaagtcgaggtggtcaggcgagggatcgagccgtattccaccggc
tggcagattgaggatgtgcgcgtatttgatccgcgtgcgctgaagcgacacgacggcccc
gcagaagacttcactcaccgcctggtcggtcggacactccgcggcgcgattcgtcgagga
aagtttttgtggttgccgctatctgatccctcatcgcccgatcggccgggcgatgaggcg
gtggtgtgccatttggggatgtccggtcaggtgctcttgggcgaacacccggaccagttt
ggggcactgcttcgtgtgtcgctcgagcttcgtagcccatcggggcaatcgatcacctgg
ggttttgtcgaccaacggctttttggttcactcgccatcgaccgcctggtcgaagcgact
gatgggaaaagccccagcacgggtactccggtccctgccggttgtgggggtgaggattcg
aggttgccctcccaggttcaccacattggacgagacctcctcgacccggctgtcgatgat
gtcgtcctcgccagagcgatacgtaaaaagtcttccggcattaaacgggtactgctcgat
cagcgcctcaccagtggggtgggaaacatttatgccgatgaggcgctctatcgaagccgc
ctgcactacgactacccggcatccaggttgagccacgccaaagcggtagaactcttgggt
catgtgcgaaaggtatttcaggacgcattggccgaaggaggcaccagttttgattggcag
tacgtgaacgtcaacggccaaagcgggtatttctcccagtcgctttcggcctacggccaa
gatggcacgccgtgcgggcgatgcggtcgcactattgtgcgggaaccgtttatgaatcgc
tcgtcgtttcggtgccccagatgccaaccgacaccgcgtaaacgggtaggttag
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