Piscirickettsia salmonis: PSLF89_2287
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Entry
PSLF89_2287 CDS
T03982
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psal
Piscirickettsia salmonis
Pathway
psal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSLF89_2287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psal03019
]
PSLF89_2287
03009 Ribosome biogenesis [BR:
psal03009
]
PSLF89_2287
Enzymes [BR:
psal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSLF89_2287
Messenger RNA biogenesis [BR:
psal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSLF89_2287
Ribosome biogenesis [BR:
psal03009
]
Prokaryotic type
rRNA helicases
PSLF89_2287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_30
UvrA_inter
Flavi_DEAD
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKP74008
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All DBs
Position
1704456..1706261
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AA seq
601 aa
AA seq
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MSSTIGFDKLGINDNILNSISELGYETPSPIQEQSIPVLLNQQDILAQAQTGTGKTAAFA
LPILTQLSLKHNQPQALVLAPTRELAIQIAEAFQRYAKYLPGFHVLPIYGGQEFRSQLRA
LKRGVHIVVGTPGRIMDHMRRETLPLESLKTVVLDEADEMLKMGFIDDVKWILQQIPTEH
QTALFSATLPPSIKGIASQHLVEPVHIQIKSTTNTVSTIEQSYMITSKHHKLEALTRYLE
LEEFDAVIVFARTKIATSELAERLEARGYSAAAMNGDMNQASREQVIKRIKNGAIDIVIA
TDVAARGIDVNRITHVVNFDIPHDPESYVHRIGRTGRAGRDGKALLFVSPRERRLLKDLE
RVTRQPIKAITPPTANEITEKREESFKKQIINTINETTDLDYYRNLIESLLPLSEKSELD
IAAALAYMAQKQKPLQMQKEDPKALSFESPHDRGGRHEPSQRERRTRQAIQTAEHGMSRC
RLEVGHRHHIQPSDIVGVLANEGNITHKAIGRIHIFDDYSLVDLTSKVTNQVIELTHQCR
VKGHPIKIKPATDKDNQEGQSNNHGRRSHSRDRDSGFKPRRSNSNHNGQSQSQSRTRKKI
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaacgataggtttcgacaaattaggtattaacgacaatattttaaactccatt
agtgaattaggctatgaaaccccttcacctattcaagagcaaagcatacctgtattactc
aaccaacaagatatactcgcacaagcgcaaacaggaaccggcaaaaccgccgccttcgca
ttgcctatactaactcaattatccttaaaacataatcaacctcaagcactagttttagca
cccacacgcgagcttgcaattcagattgctgaagcctttcagcgctatgctaaatacttg
cctggctttcatgtgttaccgatctatggcggtcaagagtttcgtagccaattacgcgcc
ctaaaacgcggcgtgcatattgttgttggcaccccaggacgtattatggatcatatgcgc
cgagaaaccctgcctttagagagcctcaaaaccgtcgttcttgacgaagcggatgaaatg
ctcaaaatgggctttatcgatgatgttaagtggattttgcaacaaatcccaacggaacac
caaaccgcactattttcagctaccttaccaccttcgattaaaggcattgccagtcagcac
ctcgttgagcctgtgcacatccaaattaaatccacgaccaatacagtcagcacaattgaa
caaagctatatgattacctctaagcatcataagcttgaagcattaacacgttacttagaa
ctagaagagttcgatgcagtcattgtttttgcacggaccaaaattgcaaccagtgagctt
gctgaacgtttagaagcccgcggctactcagccgctgcaatgaatggtgatatgaatcaa
gcctcacgtgaacaggtgataaagcgcattaaaaatggtgcaattgatattgtcattgcc
accgatgttgccgcacgtggcattgatgtcaaccggatcactcacgtggtgaactttgac
atccctcatgatccagagtcctacgttcatcgcattggccgtactggccgtgccggacgt
gatggtaaagcactactatttgtctcaccacgcgagcgccgcttacttaaagatttagaa
cgcgtcacccgtcaaccgattaaagcaatcaccccaccgacggccaatgaaatcactgaa
aagcgtgaagaaagctttaaaaaacaaatcattaacaccatcaatgagaccactgattta
gactactatcgtaacctcattgaaagtctactgccacttagcgaaaaaagtgaactggat
attgctgcggcccttgcctatatggcacaaaaacaaaagccattgcaaatgcaaaaagaa
gaccctaaagccctaagctttgaatcaccccatgatcgcggagggcgccatgaacctagc
caacgtgaacgccgtactcgtcaagcaatccaaacagctgaacatggcatgtcacgttgc
cgcctagaagttggtcatcgtcatcacattcagcccagcgatatcgtcggcgtcctcgcc
aatgaaggcaatattactcataaagccatcggccgtattcatatcttcgatgattacagc
ctagtggacctcacaagcaaagtgaccaaccaagtaattgagctaacgcatcaatgccga
gtcaaaggtcacccgattaaaatcaaacctgcaacagataaagataaccaagaaggccag
agtaataaccatggtcgccgtagtcactcccgtgaccgagatagtggttttaaaccccgc
cgctcaaattcaaaccataacggccagagccagtcacagagtcgaacaagaaaaaaaata
tcctaa
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