Piscirickettsia salmonis: PSLF89_277
Help
Entry
PSLF89_277 CDS
T03982
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psal
Piscirickettsia salmonis
Pathway
psal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSLF89_277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psal03019
]
PSLF89_277
03016 Transfer RNA biogenesis [BR:
psal03016
]
PSLF89_277
Enzymes [BR:
psal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSLF89_277
Messenger RNA biogenesis [BR:
psal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSLF89_277
Transfer RNA biogenesis [BR:
psal03016
]
Prokaryotic type
tRNA degradation factors
PSLF89_277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_SLS1_2
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
KH_2
Spt6_S1
DUF5388
Motif
Other DBs
NCBI-ProteinID:
AKP72451
LinkDB
All DBs
Position
complement(2913700..2915871)
Genome browser
AA seq
723 aa
AA seq
DB search
MNAIKKVFQYGKHTVTLETGEIARQASGAVVVHMGGTSVLVTAVAQKENVEGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGKPTEKETLACRLIDRPLRPLFPKAFINEVQVVVTVLSWD
PEVDPEIPAMIGASAALSISGVPFLGPMGAARVGYINGEYILNPTNEELEKSALELVVAG
TRSAVLMVESEAKELSEEVMLNAVLFGHEQSQAIISAIDEFVQEAGKPAWDWLPPAEDTE
ANTKVSEHARAALEAAYKIQEKQTRYAAVAQAKEAVLATLVSDDENALDQVRVTKAFSRL
ERDIVRGNILAGERRIDGRDTRTVRPIFVKNKLLARTHGSALFTRGETQAIVVATLGSER
DAQLIDSPLGERKDSFMLHYNFPPYSVGETGMVGAPKRREIGHGRLARRAIAAVLPTLDE
FPYVMRVVSEITESNGSSSMATVCGTSLALLDAGVPIKAPVAGIAMGLIKDDERFAVLSD
ILGDEDHLGDMDFKVAGTERGVTALQMDIKIEGITKEIMGAALAQAYDGRMHILDKMNSV
VAVPSALSEFAPRITTIKIPADKIRDLIGPGGATIRNLTEETNTSIDIDDDGLVKISAVD
AEKAAEAKARIEDITMVIEIGKVYPGTVTNIRDFGGFVALASGKQGLVHISQICEERVNQ
VSDRLSEGQSVKVKVLDIDRQGRIRLTMKGIDQQTGEVIVKPVESVAAAESESEQQQDTS
APE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgcaataaaaaaagtttttcaatatggcaaacacacagtcacgctagagacaggt
gaaattgcacgtcaagcctctggggctgtggttgttcatatgggcggcacttcggtatta
gttaccgcggttgctcaaaaagaaaacgttgaagggcgtgattttttccctttaactgtt
aattatcaagaaaaaacatacgctgctgggaaaattccaggtggctttttcaaacgtgaa
ggtaagcctacagaaaaagaaaccttagcctgtcgcttaatagaccggccattgcgtccg
ctttttccaaaagcatttattaatgaagtccaggttgttgtaactgtattatcttgggat
cctgaggttgatcctgaaattccagccatgattggtgcttctgcggctttatccatttcg
ggggtaccatttttgggtccgatgggagcggcacgtgttggctatatcaatggtgaatat
attcttaatccaaccaatgaagaattagaaaagtcagcacttgagcttgttgtggcagga
acgcgcagtgccgtattgatggtggagtctgaagcgaaagagttatcagaagaagtgatg
ttaaatgccgtattatttgggcatgagcagtcacaagcaattattagtgccatcgatgag
tttgtccaagaagcgggtaaaccggcctgggattggttgcctcctgccgaagatactgaa
gcgaatacaaaagttagtgaacatgcacgtgctgctttagaagcggcatataaaattcaa
gaaaagcaaacacgttatgccgcagttgcacaagcaaaagaagcggtcttagcgactctt
gtcagtgacgatgaaaatgctttggatcaagtacgcgtaaccaaagcatttagtcgatta
gaacgtgatatcgttcgtggtaatattttggccggtgaacgtcgtatagacggtcgtgat
acacggacagtgcgccctatttttgttaaaaataaactattagcgcgtacgcatggttct
gcgctgtttacccgtggtgagacacaagcgattgttgtggcaaccttgggatcagagcgc
gatgcgcagttaatcgattcgcccttgggtgagcgcaaagactcgtttatgttgcactat
aactttccaccgtactctgttggtgagacagggatggttggtgcaccaaaacggcgtgaa
attggtcatggccgtctagcacgtcgtgctattgctgcagtgttgcccacactggatgaa
tttccatatgttatgcgtgtagtgtctgagattactgaatctaatggctcaagctccatg
gccacggtgtgtggaacctctcttgctttactggatgcaggtgtgccgattaaagcgcct
gttgcaggtattgctatgggcttgattaaagatgatgagcgttttgctgtattatctgat
attttgggtgatgaagatcatttaggtgatatggactttaaagtcgctggaactgagcgt
ggtgtgacggctttacaaatggatattaagatcgagggtattaccaaagaaatcatgggt
gcggcactggcacaagcttatgatggacgtatgcatattcttgataaaatgaacagtgtt
gtggctgtgccgagtgctttatctgaatttgcaccgcgtattacgacgattaagattcct
gcggataaaattcgtgacttaatcggtccgggtggggcgacgattcgtaatttaaccgaa
gagaccaatactagcattgatatagacgatgatggtttagtgaaaatctcagcggtggat
gcggaaaaagcagccgaggcgaaagcgcgcattgaagatatcactatggtcattgagatt
ggtaaagtttatccaggaacggtgaccaatattcgtgattttggtggctttgtagcgttg
gcttcaggtaaacaaggcttagtgcatatttcacagatttgtgaagaacgtgtgaaccag
gttagtgatcgtttgagtgaaggccaaagtgttaaggtgaaggtgctggatattgatcgc
cagggtcgtattcgcttaacgatgaaaggcattgatcaacaaaccggtgaggtcattgta
aagccagtagagtcggttgcagcagctgaatctgaatcagaacaacaacaagatacgtct
gcacctgaataa
DBGET
integrated database retrieval system
