Piscirickettsia salmonis: PSLF89_343
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Entry
PSLF89_343 CDS
T03982
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psal
Piscirickettsia salmonis
Pathway
psal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSLF89_343 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psal03021
]
PSLF89_343 (rpoB)
03400 DNA repair and recombination proteins [BR:
psal03400
]
PSLF89_343 (rpoB)
Enzymes [BR:
psal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSLF89_343 (rpoB)
Transcription machinery [BR:
psal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSLF89_343 (rpoB)
DNA repair and recombination proteins [BR:
psal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSLF89_343 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
DUF2023
UPF0242
DUF6383
Motif
Other DBs
NCBI-ProteinID:
AKP72510
LinkDB
All DBs
Position
complement(2857177..2861253)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRREFAKLPHVLDVPYLLSIQKDSYQQFLQRGVNLEKRLESGLHAAFSSV
LPIASFSGSAELQYVDYRLGEPLFDVRECRIRGISYAAPLRVKLRLVIYDKTASGDAKVV
KDIKEQEVYMGELPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDLLYVRIDRRRKLPATILLRALGYSAEEILDIFFETTAFYLGD
KGVEMELVPERLRGETVAFDIKDEHGNVLVEEGRRVTVRHVSKIAEAGLKKLVVPADYIL
GKALAHDIVSSDGEIVAAANSEISPDLLAAVHKAGVREVRVIYTNDMDRGPYISDTLRAD
PTTSQMEALVEVYRMMRPGEPPTKEAAENLINTLFFSEDRYDLSSVGRMKFNRRIGRSDI
NGEGVLSKEDILAVMKTLIEIRDGKGQVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERA
VRERLGIAESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFLETPYRRV
ADGKVTGEVDYLSAIEEARHIIAQANATVGEDGSLTDSLLHCRQSGETFFTTADKVDYMD
VAPRQMVSVAASMIPFLEHDDANRALMGSNMQRQAVPTLIAEKPVVGTGVERTVAVDSGV
TVVAKRGGVIDFVDATRIVVRVDDAETDAGEAGVDIYNLTKYTRSNQNTCINQRPLVCNG
DVIAKGDVLADGPSTDLGELALGQNMYVAFMPWNGYNFEDSILISERVVEEDRFTTIHVE
ELVCIARDTKLGPEEISPDIPNVAESSLAKLDESGIVFVGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTRDGVEKDERAKEIEEAELE
MFRKDLRDEVRIREADVLQRLRRMLIGQVTIGGSGLKAGATISAADIDDLPAERLFTIRL
QDEKLSDQLERIQDHFSDIRKEFEQRLEEKRLKITQGSDLAPGVLKIVKTYIAVKRRIQP
GDKMAGRHGNKGVISQIVPVEDMPHDKNGRPVDICLNPLGVPSRMNIGQILETHLGWAAK
GLGERIGEMLDEQREVAKVREFLDRVYNGDTVHPEDLDSLTDQEVLALAHNLRRGVPMAT
PVFDGAAEAQIKGMLKLAGLPESGQTILYDGRTGEQFDRPVTVGYMYMLKLNHLVDDKMH
ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVGGRTKV
YKNIVEGDHRMEPGMPESFNVLVKEIRSLGIDIELEQE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctactcctacactgaaaagaagcgaattcgtagggagtttgctaaacttcctcac
gtgttagatgttccttaccttttgtctattcaaaaggattcctatcaacaatttttgcag
cgaggcgtgaatttagaaaagcgtcttgagtccggtttacatgctgccttttcatccgta
ttgccgattgcaagcttctctggaagtgcagagttgcaatacgttgactatcgtttaggt
gagccgctgttcgacgtgagagagtgtcgaattcgtggcatcagttatgctgctcctttg
cgtgttaagctgcgcttggtgatctacgataaaacagcatccggcgatgcaaaagtggtt
aaagacatcaaagagcaagaagtctatatgggtgagctgcccttaatgactgaaaatggt
acatttattattaatggaactgagcgtgtgattgtttctcaattgcatcgttcgccgggt
gtatttttcgatcatgatcgaggcaaaacacactcatcaggaaagcttctgttctctgca
cgagtgattccttatcgtggctcttggctcgattttgagtttgaccctaaagatttactg
tatgtgcgtattgatcgccgccgtaaacttcccgcgactatcttattgcgtgcgttaggc
tatagtgcagaagagattttagatattttctttgagacaactgcgttttatcttggtgat
aaaggcgttgagatggaattggtccctgagcgcctgcgtggcgaaacggttgcttttgat
attaaagatgagcatggaaatgtgctggttgaagaaggccgccgcgtgactgttcgccat
gtgagtaaaatagcagaagccggcttaaagaaactggttgtgccagcggattatatttta
ggtaaagctttagcacatgacattgtcagcagtgatggtgaaattgttgcggcggccaat
agtgaaattagcccagatttattggcggctgttcataaggctggtgtacgtgaagtacgc
gtgatctataccaatgatatggatcgcggaccatatatctctgatacgctgcgcgctgat
ccgaccacatcgcagatggaagccttggttgaagtatatcgaatgatgcgaccaggtgag
ccaccaacgaaagaagcagcagaaaacttaattaatacgttattcttttcagaggatcgt
tatgatttatcctctgtaggtcgtatgaaatttaatcgccgtattggtcgttcggatatc
aatggtgaaggtgtgctgtcaaaagaagatattttggcagtgatgaagaccttgattgaa
attcgtgatggtaaaggccaagtggatgatattgaccacttgggtaatcgtcgggtgcgt
tctgttggcgagatggctgaaaaccaattccgtgttggtttagtgcgtgtagagcgtgca
gtgcgtgagcgtttagggattgcggaatctgaaaatttgatgccgcaagacttaattaat
gctaagcccgtctccgctgccattaaagagttctttggctcgagccaattatctcagttt
atggatcagaataatccactgtctgaaattacccataagcgccgtgtttcggccttaggt
ccaggtggcttaacccgtgagcgcgctggctttgaggtgcgcgacgtacatccaacgcat
tatggtcgagtttgcccgattgaaacgcctgagggaccaaacatcggtttgattaactcg
ttggcaacgtatgctagaaccaatgaatatggtttcttagagacgccgtatcgtcgagtt
gctgatggcaaggtcaccggtgaggtcgattacttatctgcgattgaagaagctcggcat
attattgctcaggctaatgcgactgtgggtgaagacggtagcttaaccgatagtttattg
cactgtcgtcaatcgggtgagaccttctttaccacggcggataaagtcgattatatggac
gttgctccgcgtcagatggtctctgtggccgcgtcgatgattccgttcttagagcacgat
gatgcgaaccgggccttgatgggatcgaacatgcaacgccaagcggtgccgaccttaatt
gctgaaaagccagtggtcggaaccggtgttgagcgtacggttgcggtggattctggtgta
actgttgttgccaaacgtggtggtgtgattgattttgtcgatgcaacacgtatcgttgtg
cgtgtagatgatgctgaaacagatgctggtgaagcaggggttgatatttataacctgact
aaatatacccgttcgaaccaaaatacctgtattaatcagcgtccattagtgtgcaatggt
gatgtgattgccaaaggcgatgtcttagctgatggtccatcgactgatttgggtgagttg
gctttaggtcagaatatgtatgtggcctttatgccgtggaatggctataacttcgaggat
tcgatccttatttctgaacgtgtcgttgaagaagatcgctttactacgattcatgttgaa
gagttggtctgtattgctcgtgataccaaattagggccagaggaaatctctcctgatatt
ccaaatgttgctgaaagttcgctggctaaattggatgagtcgggtattgtcttcgttggt
gcagaagtgaaggcgggtgatattttagtcggtaaggtgacaccgaaaggtgaaacacag
ctgacacctgaagaaaaacttttgcgcgcgatttttggtgaaaaagcctctgatgtcaaa
gatacgtcactgcgcatgcctacgggtatgtctgggacggtaattgatgtacaggtcttt
acccgtgatggcgttgaaaaagacgagcgggcgaaagaaatcgaagaagcagaactggaa
atgttccgtaaagacttgcgtgacgaagtacgtattcgcgaagcggatgtcttgcaacgt
ttacgcagaatgcttatcggtcaggtgaccattggtggctcgggtttaaaagcaggggca
actatttcggcggctgatattgatgacctgcccgcggaaagattgttcaccattcgtctg
caagatgaaaagctaagcgatcaattagagcgcattcaagatcatttttctgatattcgt
aaagaatttgagcaacgtcttgaagaaaagcgcttgaaaatcactcagggctcagatttg
gcgcccggtgtattgaaaattgttaagacgtatattgctgttaagcgtcgtattcagccg
ggtgataagatggccggtcgtcacggaaacaaaggggtgatctcgcagattgttccagtg
gaagatatgccgcatgataaaaacggtcgtccagtggatatttgcttgaacccacttggg
gtgccgtcgcgaatgaatattggtcagattctagagactcacttaggttgggcagcgaaa
ggtcttggcgagcgcattggcgagatgcttgatgagcaacgtgaggtcgctaaggttcgt
gagttcttagaccgggtgtataacggtgatactgtgcatccagaagatctagattctttg
acagatcaggaagtgttagctttagcccacaacctgcgtaggggtgtaccgatggcaaca
ccggtctttgatggggcggctgaagcgcaaatcaaaggcatgttaaagcttgcagggtta
cctgagtcaggtcagaccattttatatgatggtcgcacgggtgagcagtttgatcgtccg
gtgacggtgggttatatgtacatgctgaaattgaatcacttagtcgatgataagatgcat
gcacgttcaacaggctcttatagtttggtgacgcagcagccgctcggtggtaaagcgcag
ttcggtggtcagcgttttggtgagatggaggtctgggcgcttgaagcttatggtgccgct
tacaccttacaagagatgctgacggtgaaatccgatgatgtgggtggacgaactaaagtc
tataaaaacatcgttgaaggagatcaccgtatggaaccaggtatgcctgagtcctttaat
gtattagtgaaagaaatccgctcactgggtatcgatatcgagcttgagcaagagtaa
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