Piscirickettsia salmonis: PSLF89_828
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Entry
PSLF89_828 CDS
T03982
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psal
Piscirickettsia salmonis
Pathway
psal03410
Base excision repair
psal03430
Mismatch repair
psal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSLF89_828
03430 Mismatch repair
PSLF89_828
03440 Homologous recombination
PSLF89_828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psal03400
]
PSLF89_828
DNA repair and recombination proteins [BR:
psal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PSLF89_828
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PSLF89_828
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSLF89_828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AKP72907
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Position
339547..341319
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AA seq
590 aa
AA seq
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MEIKIQARTRCEQTFNHAQGCGLTPLLAHVIANRVQGQGLAFDRIVDPRLADLSAPKQLQ
DAQRAAQRIVQAINNSEVIGVLTDYDVDGITSHAIISRAFTDYFQVKASQLQQLIGHRME
DGYGVSDGLTNKILSKERLPELIITADCGSSDQVRIARLAAAGIDVIVTDHHAIPAEGIP
QAAYAVINPTRDDCEYPDRVIAGCMVAWLLMCQVRLELLDDEGIANTQLVIPKLSGLLDY
VALGTVADAVSLFNATNRAVVNTGLHVMNRLERPCWRAMKQLLNRQHAFGSEDLGFQLGP
RINARSRMADPYAALRFLLAETDSEAMDQLLLLNADNEDRKLTERQMLEEAICQAEGCLQ
QKLLSMTVYAESFHAGVQGIVASRLVDRYGHPCVVFSPTNDPEKLSGSARTIADVHIRDA
LQYVADHTEGVILAFGGHKGAAGLKIARNRLEEFQIYFDHAIRRQLDVEELYPVRLSDGP
LSLAKLDLAAFDQLERLQPFGREFEGPQFEGYFNVHSVRLIGKEKIHLSLEFEQDGFYRQ
AVWFRALSTEGEAVPIHAGDHVHCLYRLAANEFRGERRLQLMVEVCLKQG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaaaattcaagcgcggacgcgctgtgagcagacctttaaccatgcgcaaggt
tgtggcttaacgccgttgcttgctcatgttattgctaaccgtgtgcaagggcaaggttta
gcctttgaccggatcgttgatccacgtttagctgatttaagcgcgcctaagcagttgcaa
gatgcccaaagagcggcacagcgtattgtgcaggcgattaataacagtgaggtgattggc
gtattaacagattatgatgttgatggtattacttcacatgcaattatctcacgggcgttc
accgattatttccaagtgaaagcctcacagcttcagcagttgattggtcatcggatggaa
gatggttatggcgtgagtgatggcttaacgaataaaattttatctaaggagagattgcct
gagctgattattactgcagattgcggttcttctgatcaggtaagaattgcccggctggca
gctgcgggtattgatgtgattgttactgaccatcatgcgattccagcagaaggtataccg
caggccgcatatgcggttattaacccgacacgcgatgattgtgaatacccggatcgagtg
atcgccggttgcatggtggcatggttattgatgtgtcaggtgcggttggagttactagat
gatgaaggtattgcaaatactcaacttgttattcctaagttaagtggcttattggactat
gtcgctttaggaacagtcgctgatgcggtatcgctatttaatgcgactaatcgcgctgtg
gtaaatactggacttcatgtgatgaatcgtttagagcgtccctgttggcgagcgatgaag
cagctgttaaatcgtcagcatgcctttggctcggaagacttaggctttcagttagggccg
cgtattaacgctcgttcacggatggctgatccttatgccgctttgcgctttttactggca
gaaacagatagtgaggcaatggatcagctcttattgttaaatgctgataatgaggataga
aaattaacagagcgccagatgctggaggaggcaatttgtcaagctgaaggttgccttcag
caaaagttactgtcaatgactgtttatgccgagagttttcatgctggggttcaagggatt
gtggcctcacgcttggtcgatcgttatgggcatccctgtgtggtattttcacccaccaat
gaccctgaaaaattaagcggttcggcgcgaacgattgctgatgtgcacattcgcgatgcc
ttacagtacgttgctgatcatactgagggagttattctggcattcggtggtcataagggg
gcggcggggttaaaaattgctcgtaatcgcttagaggagtttcaaatttactttgatcac
gcgatacggcgacagcttgatgttgaggagttataccctgtgcgcttaagtgatggccca
ttgtctttggcgaagcttgacttagctgcctttgatcagcttgagcgtttgcaaccgttt
ggtcgggagtttgaagggccgcagtttgaaggctactttaatgttcatagtgtacgttta
attggtaaagaaaaaattcatttaagcttagaattcgagcaagatggtttttaccgccaa
gcggtttggtttcgtgctttaagtactgaaggtgaggcagtaccgatacatgcgggtgat
catgtgcattgtttatatcgtttagcggctaatgaatttcgtggtgaacgccgcttacag
ttaatggtcgaagtgtgtttgaagcaaggctga
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