Pseudomonas salmasensis: HU731_007620
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Entry
HU731_007620 CDS
T07619
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psam
Pseudomonas salmasensis
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psam03009
]
HU731_007620 (rlmD)
Enzymes [BR:
psam01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HU731_007620 (rlmD)
Ribosome biogenesis [BR:
psam03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HU731_007620 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_23
PCMT
Methyltransf_11
Met_10
Methyltr_RsmB-F
RrnaAD
Methyltransf_15
DREV
PDGF
PepX_C
Motif
Other DBs
NCBI-ProteinID:
QXH79656
UniProt:
A0AA92MYB6
LinkDB
All DBs
Position
complement(1753944..1755296)
Genome browser
AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQIPVGKKQRLTIERLANDGRGIVFFEGRTWFVNGALAGEEV
EARVLGAHGKVVEARTERVFQASELRRPAPCAHVGRCGGCSVQHLPHEEQLALKQRMLAE
QLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKKLEVGFRAVASQDIVAIDDCP
VLVQALQPIMQRLPTMLRRLSKPQALGHVELFSGSSIAVLLRHMAPLSEADLQILKEFCA
FHDAQLWLHGEGQPEPVEPGQALGFRLDAWDLELAYRPGDFVQVNAGVNQAMVAQALQWL
APQADERVLDLFCGLGNFALPLARSVREVVAVEGVQAMVERAALNAVSNHLHNAQFFQAD
LSQPLTDAEWAKQGFSAVLLDPPRDGALEVVRKLAALGAKRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccaaccgacgggcggcagccgggccccacag
atacccgtgggcaagaaacagcgcctgaccatcgagcgcctggccaatgacggccggggc
attgtgttctttgagggccgcacctggtttgtgaatggcgcgttggccggcgaagaggtg
gaagcacgggtattgggcgcccatggcaaagtggtcgaggcgcgcaccgagcgggtgttc
caggccagtgagttgcgtcgcccggcaccctgtgcccatgttggccgctgcggcggttgc
agcgtgcagcacctgccccatgaagaacaacttgccctgaaacagcgcatgcttgccgag
caattgtcccgtgtggccggcgtcgagccgcaggagtgggcagcgccgttgagcgggccg
gagttcggttaccggcgccgcgcccgcgtggccgtacgttgggacgccaaggcgaagaaa
ctcgaagtgggttttcgcgccgtggccagccaggacatcgtcgctatcgatgattgcccg
gtgctggtacaggccttgcaaccgatcatgcagcgtttgccaacgatgctgcgtcgcttg
agcaaaccgcaggcgttggggcatgtcgagttgttcagcggttcgtccatcgccgtgttg
ctgcggcatatggcaccgttgtccgaggctgacctgcagatcctcaaggaattctgcgcc
ttccatgacgcccaactgtggctgcacggcgaagggcagccggagcccgttgagccgggt
caggccctgggcttccgtttggatgcctgggacctggagctggcgtaccggccgggcgac
tttgtgcaggtcaacgccggggtcaaccaggcgatggtcgcccaagcgctgcaatggctg
gcgccacaagccgacgaacgggtactggacctgttttgcggcttgggcaactttgccctg
ccactggctcgcagtgtgcgcgaagtggtggcggtggagggcgtgcaggccatggtggag
cgtgcggcgctcaatgccgtcagcaaccatttgcataacgcacagttttttcaggccgat
ttgtcccagcctttgaccgacgcagaatgggccaaacagggcttttctgcggtactcttg
gacccaccccgcgatggtgccctggaggttgtgcgcaaacttgcagccttgggggccaag
cgcctggtgtatgtgtcctgcaacccagccacgctggcgcgggacacggttgagttggtc
aagcaaggctaccggctaaagcgtgccgggatcctcgacatgtttccgcagaccgcgcat
gtcgaggccatggcgttatttgaagcgggctag
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